| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,017,334 – 11,017,429 |
| Length | 95 |
| Max. P | 0.814156 |
| Location | 11,017,334 – 11,017,429 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 76.65 |
| Mean single sequence MFE | -15.71 |
| Consensus MFE | -12.28 |
| Energy contribution | -11.48 |
| Covariance contribution | -0.80 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.814156 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11017334 95 + 22224390 AUUGUGUCAUUGCUAGUAUUAAAUCAGAGCCAAACAAAUGAUGAUACAUAAGUGCGACACAAGUGC-----------------GCAAAAAAAAGAAAAAAAUAUACAAACAC ..((((((((((((.............))).........)))))))))....((((.((....)))-----------------))).......................... ( -13.92) >DroSec_CAF1 10097 93 + 1 AUUGUGUCAUUGCUAGUAUUAAAUCAGAGCCAAACAAAUGAUGAUACAUAAGUGCGACACAAGUGC-----------------GCAGAAAAAGAAAAAAAAAACAA--AAAA ..((((((((((((.............))).........)))))))))....((((.((....)))-----------------)))....................--.... ( -13.92) >DroEre_CAF1 3939 85 + 1 AUUGUGUCAUUGCUAGUAUUAAAUCAGAGCCAAACAAAUGAUGAUACAUAAGUGCGACACAAGUAC-----------------GCAGAAAAA-------A--AUACGAA-AC .((((((..((((..(((((..((((............)))))))))....((((.......))))-----------------)))).....-------.--)))))).-.. ( -13.10) >DroYak_CAF1 5262 92 + 1 AUUGUGUCAUUGCUAGUAUUAAAUCAGAGCCAAACAAAUGAUGAUACAUAAGUGCGACACAAGUGC-----------------GCAGAAAAAACAAAA-A--UUACAAACAC ..((((((((((((.............))).........)))))))))....((((.((....)))-----------------)))............-.--.......... ( -13.92) >DroAna_CAF1 4720 102 + 1 AUUGUGUCAUUGCUAGUAUUAAAUCAGAGCCAAACAAAUGGUGAUACACAAGUACGGUACGAGUGGAAGGGGGUAGUGGAGGGGCAGUGGAG-------G--CUUCGGC-AC ......((((((((..(((((..((...((((......))))....(((..(((...)))..)))....))..)))))....))))))))..-------(--(....))-.. ( -23.70) >consensus AUUGUGUCAUUGCUAGUAUUAAAUCAGAGCCAAACAAAUGAUGAUACAUAAGUGCGACACAAGUGC_________________GCAGAAAAA__AAAA_A__AUACAAA_AC .(((((((..((((.(((((..((((............)))))))))...)))).))))))).................................................. (-12.28 = -11.48 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:01 2006