| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 196,537 – 196,637 |
| Length | 100 |
| Max. P | 0.994149 |
| Location | 196,537 – 196,637 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 90.20 |
| Mean single sequence MFE | -21.34 |
| Consensus MFE | -15.99 |
| Energy contribution | -15.87 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.14 |
| Mean z-score | -4.00 |
| Structure conservation index | 0.75 |
| SVM decision value | 2.45 |
| SVM RNA-class probability | 0.994149 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 196537 100 + 22224390 UAUUUUUGGAUUACUCUGCGAGACGAGUCCACACUAUUUCCCUCUCCUCGUCCUGCAGUAG-----CCUCAGUCUACCAGUAUUGAACGCCUCUCUCCCCUUAUA .......(((.....(((((.((((((...................)))))).)))))..(-----(.((((((.....).)))))..)).....)))....... ( -18.61) >DroSec_CAF1 27572 100 + 1 UAUUUUUGGAUUACUCUGCGAGACGAGUCCACACCAUUUCCCUCUCCUCGUCCUGCAGUAG-----CCUCAAUCCACUAAUAUUAAACGCCUCUCUCCCCUUAUA ((((..((((((.(((((((.((((((...................)))))).))))).))-----....))))))..))))....................... ( -21.51) >DroSim_CAF1 26823 100 + 1 UAUUUUUGGAUUACUCUGCGAGACGAGUCCACACCAUUUCCCUCUCCUCGUCCUGCAGUAG-----CCUCAAUCCACUAAUAUUAAACGCCUCUUUCCCCUUAUA ((((..((((((.(((((((.((((((...................)))))).))))).))-----....))))))..))))....................... ( -21.51) >DroEre_CAF1 36239 100 + 1 UAUUUUUUGAUUACUCUGCGGGACGAGUCCACACCAUUUCCCUCCCCUCGUCCUGCAGUAG-----UCACAAUCCACCAGUAUUAAACGUCUCUCCCCCCUUAUA .......((((((((..((((((((((...................)))))))))))))))-----))).................................... ( -24.51) >DroYak_CAF1 26550 105 + 1 UAUUUUUGGAUUACUCUGCGGGUCGAGUCCACACCGUUUCCCUCUCCUCGUCCUGCAGUACCACCACCUCAAUCCACCAGUAUUAAACUUCUCUCUCCCCUUAUA ((((..((((((...(((((((.((((...................)))).)))))))............))))))..))))....................... ( -20.57) >consensus UAUUUUUGGAUUACUCUGCGAGACGAGUCCACACCAUUUCCCUCUCCUCGUCCUGCAGUAG_____CCUCAAUCCACCAGUAUUAAACGCCUCUCUCCCCUUAUA ((((..((((((...(((((.((((((...................)))))).)))))............))))))..))))....................... (-15.99 = -15.87 + -0.12)
| Location | 196,537 – 196,637 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 90.20 |
| Mean single sequence MFE | -23.91 |
| Consensus MFE | -18.69 |
| Energy contribution | -18.93 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.600550 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 196537 100 - 22224390 UAUAAGGGGAGAGAGGCGUUCAAUACUGGUAGACUGAGG-----CUACUGCAGGACGAGGAGAGGGAAAUAGUGUGGACUCGUCUCGCAGAGUAAUCCAAAAAUA .......(((....(((.((((.((....))...)))))-----)).((((..((((((...................))))))..)))).....)))....... ( -24.01) >DroSec_CAF1 27572 100 - 1 UAUAAGGGGAGAGAGGCGUUUAAUAUUAGUGGAUUGAGG-----CUACUGCAGGACGAGGAGAGGGAAAUGGUGUGGACUCGUCUCGCAGAGUAAUCCAAAAAUA ..((((.(........).)))).((((..((((((...(-----((.((((..((((((...................))))))..)))))))))))))..)))) ( -26.01) >DroSim_CAF1 26823 100 - 1 UAUAAGGGGAAAGAGGCGUUUAAUAUUAGUGGAUUGAGG-----CUACUGCAGGACGAGGAGAGGGAAAUGGUGUGGACUCGUCUCGCAGAGUAAUCCAAAAAUA ..((((.(........).)))).((((..((((((...(-----((.((((..((((((...................))))))..)))))))))))))..)))) ( -26.01) >DroEre_CAF1 36239 100 - 1 UAUAAGGGGGGAGAGACGUUUAAUACUGGUGGAUUGUGA-----CUACUGCAGGACGAGGGGAGGGAAAUGGUGUGGACUCGUCCCGCAGAGUAAUCAAAAAAUA ..((((.(........).))))...........(((..(-----((.((((.(((((((...................))))))).)))))))...)))...... ( -23.71) >DroYak_CAF1 26550 105 - 1 UAUAAGGGGAGAGAGAAGUUUAAUACUGGUGGAUUGAGGUGGUGGUACUGCAGGACGAGGAGAGGGAAACGGUGUGGACUCGACCCGCAGAGUAAUCCAAAAAUA .......(((......(.((((((.(....).)))))).).......((((.((.((((..(..(....)..).....)))).)).)))).....)))....... ( -19.80) >consensus UAUAAGGGGAGAGAGGCGUUUAAUACUGGUGGAUUGAGG_____CUACUGCAGGACGAGGAGAGGGAAAUGGUGUGGACUCGUCUCGCAGAGUAAUCCAAAAAUA .......(((........((((((........)))))).........((((.(((((((...................))))))).)))).....)))....... (-18.69 = -18.93 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:08 2006