Locus 4192

Sequence ID X_DroMel_CAF1
Location 11,000,054 – 11,000,166
Length 112
Max. P 0.771568
window6891

overview

Window 1

Location 11,000,054 – 11,000,166
Length 112
Sequences 3
Columns 112
Reading direction reverse
Mean pairwise identity 96.43
Mean single sequence MFE -28.85
Consensus MFE -27.25
Energy contribution -27.37
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -1.87
Structure conservation index 0.94
SVM decision value 0.53
SVM RNA-class probability 0.771568
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11000054 112 - 22224390
CGGCUGCCAGGUGUCGGCUGCAUAUGAUUUAGCAGUCUAUUUAAAUAAUUUUACUGCAAGGCUGCGCACUUGUAUUAUUUUUGUUUAAUUCUCUAUGCAUUUGUCACCACGC
.((.((.(((((((.((((((.((.....))))))))...((((((((...((.((((((((...)).)))))).))...))))))))........))))))).)))).... ( -29.00)
>DroSim_CAF1 14426 112 - 1
CGGCUGCCAGGUGUCGGCUGCAUAUGAUUUAGCAGUCUAUUUAAAUAAUUUUACAGCAAGGCUGCGCACUUGUAUUAUUUUUGUUUAAUUCUCUAUGCAUUUGUCACCGCGC
(((.((.(((((((.((((((.((.....))))))))...((((((((.......(((((((...)).))))).......))))))))........))))))).)))))... ( -27.64)
>DroYak_CAF1 12461 112 - 1
CGGCUGCCAGGUGUCGGCUGCAUAUGAUUUAGCAGUCUAUUUAAAUAAUUUUACUGCAAGGCUGCACACUUGUAUUAUUUUUGUUUAAUUCCCUGUGCAUUUGUCACUGCGC
.((((((((((....((((((.((.....))))))))...((((((((...((.((((((........)))))).))...))))))))...)))).)))...)))....... ( -29.90)
>consensus
CGGCUGCCAGGUGUCGGCUGCAUAUGAUUUAGCAGUCUAUUUAAAUAAUUUUACUGCAAGGCUGCGCACUUGUAUUAUUUUUGUUUAAUUCUCUAUGCAUUUGUCACCGCGC
.((.((.(((((((.((((((.((.....))))))))...((((((((...((.((((((........)))))).))...))))))))........))))))).)))).... (-27.25 = -27.37 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:48 2006