| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,993,100 – 10,993,202 |
| Length | 102 |
| Max. P | 0.715870 |
| Location | 10,993,100 – 10,993,202 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.36 |
| Mean single sequence MFE | -29.00 |
| Consensus MFE | -15.95 |
| Energy contribution | -16.87 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.715870 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10993100 102 - 22224390 CAUUCGCAUUUUGUGAGGUUAAACAUGAAUCGCAAAAAAA----AAAAAACGGCAAUG----AAUUUGCUUCAUGU--------UUCUUCUGCCGGCGGCGACGUCGGCGUCGUCGUC-- ...((((.....))))(((.(((((((((..(((((....----..............----..))))))))))))--------)).....)))((((((((((....))))))))))-- ( -32.35) >DroSec_CAF1 5188 106 - 1 CAUUCGCAUUUUGUGAGGUUAAACAUGAAUCGCAAAAAAAAAAAAAAAAACGGCAAUG----AAUUUGCUUCAUGU--------UUCUUCUGCCGGCGGCAACGUCGCCGUCGUCGUC-- ...((((.....))))((..(((((((((..(((((......................----..))))))))))))--------))..)).(.(((((((......))))))).)...-- ( -26.86) >DroEre_CAF1 4864 98 - 1 CAUUCGCAUUUUGUGAGGUUAAACAUGAAUCGCAAAAA--------AAAACGGCAAUG----AAUUGUCUUCAUGU--------UUCUUCUGCCGGCAGCGACGUCAACGUCGCCGUC-- .....((.((((((((..(((....))).)))))))).--------....(((((..(----((.((....))...--------)))...))))))).((((((....))))))....-- ( -28.70) >DroWil_CAF1 9679 109 - 1 ---------AAUGUGAGGUUAAGCCUGAAUUUAAAACAAAA--AAAUAAAAGAGAACGCACACAUUUGCGUCAUGGACGGCGCGUGUAUUUGUCGGCUGCGGCGUUUUCGUCGCCGACGC ---------....(.(((.....))).).............--..............((((((....(((((......)))))))))....((((((.((((.....)))).)))))))) ( -28.60) >DroYak_CAF1 5682 103 - 1 CAUUCGCAUUUUGUGAGGUUAAACAUGAAUCGCAAAAAAA---AAAAAAACGGCAAUG----AAUUUGCUUCAUGU--------UUCUUCCGCCGGCAGCGACGUCAACGUCGCCGUC-- ...((((.....))))((..(((((((((..(((((....---...............----..))))))))))))--------))...))...(((.((((((....)))))).)))-- ( -28.50) >consensus CAUUCGCAUUUUGUGAGGUUAAACAUGAAUCGCAAAAAAA___AAAAAAACGGCAAUG____AAUUUGCUUCAUGU________UUCUUCUGCCGGCAGCGACGUCAACGUCGCCGUC__ ........((((((((..(((....))).))))))))..............((((...................................))))(((.((((((....)))))).))).. (-15.95 = -16.87 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:34 2006