Locus 4184

Sequence ID X_DroMel_CAF1
Location 10,987,917 – 10,988,016
Length 99
Max. P 0.850983
window6872

overview

Window 2

Location 10,987,917 – 10,988,016
Length 99
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 78.54
Mean single sequence MFE -35.08
Consensus MFE -23.92
Energy contribution -24.12
Covariance contribution 0.20
Combinations/Pair 1.17
Mean z-score -1.64
Structure conservation index 0.68
SVM decision value 0.79
SVM RNA-class probability 0.850983
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10987917 99 + 22224390
UCUCCUGGUGCUCCUGGGCAUCUGUGGAGCCGCUCGGGCGGAUCUUACCUACCGCGGAAAUGCAGUGCAUCCAGGU-----CAUUAAGAAAUGGAUACUGUAUU
.((((.((((((....))))))...))))((((..((..((......))..)))))).((((((((..(((((..(-----(.....))..))))))))))))) ( -37.90)
>DroSec_CAF1 21 99 + 1
UCUCCUGGUGCUCCUGGGCAUCUGCGGAGCCGCUCUGGCGGAUCUCACCUACCGCGGAAAUGCAGUGCAUCCAGGU-----CGUUAAGAAAUGAAUACUAUAUU
...((((((((..(((.(..(((((((.(((.....)))((......))..)))))))..).))).))).)))))(-----((((....))))).......... ( -34.50)
>DroSim_CAF1 512 99 + 1
UCUCCUGGUGCUCCUGGGCAUCUGCGGAGCCGCUCGGGCGGAUCUCACCUACCGCGGAAAUGCAGUGCAUCCAGGU-----CGUUAAGAAAUGAAUACUAUAUU
...((((((((..(((.(..(((((((.(((.....)))((......))..)))))))..).))).))).)))))(-----((((....))))).......... ( -35.00)
>DroEre_CAF1 21 104 + 1
UCUCCUGGUGCUCCUGGGCAUCUGCGGAGCCGCCCGGGCGGAUCUCACCUACCGCGGCAAUGCAGUGCAUCCAGGUGCAUCCACUAGGAAUUCGAUAAUAUAGC
..(((((((((.((((((((.(((((..(((((..((..((......))..)))))))..))))))))..))))).))....)))))))............... ( -44.80)
>DroYak_CAF1 700 99 + 1
UCUCCUGCUGCUCCUGGGCAUCUGUGGAGCCGCCAGGGCGGAUCUCACCUACCGCGGCAAUGCAGUGCAUCCAGGU-----CACUAAGAAUUGGAUAUUAUACU
..(((..((...((((((((.(((((..(((((..((..((......))..)))))))..))))))))..))))).-----.....))....)))......... ( -33.10)
>DroPer_CAF1 33 78 + 1
UUUGCUCCUGCUCCUAACCAUUUGUGGCGUGGCCUGGGGCGAUGUGACGUACCGCGGCAAUGCCGUGCAUCCAGGU-----UA---------------------
...((....))...(((((....((.((((.(((...))).)))).))....((((((...))))))......)))-----))--------------------- ( -25.20)
>consensus
UCUCCUGGUGCUCCUGGGCAUCUGCGGAGCCGCCCGGGCGGAUCUCACCUACCGCGGAAAUGCAGUGCAUCCAGGU_____CAUUAAGAAAUGGAUACUAUAUU
...((((((((.(....((((((((((..((((....))))..........))))))..)))).).))).)))))............................. (-23.92 = -24.12 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:30 2006