Locus 4181

Sequence ID X_DroMel_CAF1
Location 10,984,473 – 10,984,583
Length 110
Max. P 0.983917
window6868

overview

Window 8

Location 10,984,473 – 10,984,583
Length 110
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 71.22
Mean single sequence MFE -33.74
Consensus MFE -9.49
Energy contribution -10.57
Covariance contribution 1.08
Combinations/Pair 1.12
Mean z-score -2.31
Structure conservation index 0.28
SVM decision value 1.96
SVM RNA-class probability 0.983917
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10984473 110 + 22224390
AAUGCAAGACCCAG-------UUGCUCCUGU--GUCUGCGUUAGUGAAUGCAAUCAAUUACGAGUAUCUAAUGGCAACCGCCGUCGAGGAUUUGCAGAUACAA-AUGCAGAUGCAGAUAC
...((((.......-------))))..((((--(((((((((.(((..(((((((......))..((((.(((((....)))))...)))))))))..))).)-)))))))))))).... ( -35.40)
>DroSec_CAF1 8569 98 + 1
AACGCAAGACCCAG-------UUGCUCCUGUGUGUCUGCGUUAGUGAAUGCGAUUAAUUACGAGUAUCU----------GCCGUCGAGGAGAUGCAGAUACAA-AUGCAGAUGCAG----
...((((.......-------)))).....((((((((((((.((((.((....)).))))..((((((----------((.(((.....))))))))))).)-))))))))))).---- ( -32.80)
>DroSim_CAF1 8694 98 + 1
AACACAAGACCCAG-------UUGCUCCUGUGUGUCUGCGUUAGUGAAUGCGAUUAAUUACGAGUAUCU----------GCCGUCGAGGAGAUGCAGAUACAA-AUGCAGAUGCAG----
...........(((-------......)))((((((((((((.((((.((....)).))))..((((((----------((.(((.....))))))))))).)-))))))))))).---- ( -31.30)
>DroEre_CAF1 9382 97 + 1
AACGCAAGACCAGG-------AUGCACCUGU--GUCUGCGUCA-UGCAUGCGAUUAAUUA------UCUUUUGGCAAUUG---ACGAGGCGGAGCAGAUCCGUCGAGGAGAUGCAG----
.(((((.(((((((-------.....)))).--))))))))..-(((((.((.((((((.------.(....)..)))))---))).((((((.....))))))......))))).---- ( -34.50)
>DroYak_CAF1 9028 104 + 1
AACGUAAGACCAAGAUGCAAGAUGCACCAGU--GUCUGCGUCA-UGAGUGCGAUUAAUUA------UCUGAUGGCAAUUG---CCGAGGCGGAGCAGAUCCGUCGAGGAGAUGCAG----
..((((....((.((((((.(((((....))--))))))))).-))..))))........------((((.((((....)---)))...))))(((..(((.....)))..)))..---- ( -34.70)
>consensus
AACGCAAGACCCAG_______UUGCUCCUGU__GUCUGCGUUAGUGAAUGCGAUUAAUUACGAGUAUCU__UGGCAA__GCCGUCGAGGAGAUGCAGAUACAA_AUGCAGAUGCAG____
......................(((..((((..(((((((((................................................))))))))).......))))..)))..... ( -9.49 = -10.57 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:26 2006