| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,937,162 – 10,937,254 |
| Length | 92 |
| Max. P | 0.690534 |
| Location | 10,937,162 – 10,937,254 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 87.83 |
| Mean single sequence MFE | -25.13 |
| Consensus MFE | -20.18 |
| Energy contribution | -21.02 |
| Covariance contribution | 0.83 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.690534 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10937162 92 - 22224390 UAUAAUCCUCGCAUCACAUGUUCGUCUCCAGUGCUCACUUCCUGCGCUGACCACCACUCAGAAUGGUAACGAUGCGGAUGAAUAUGUUCAGC ..........((...((((((((((((.((((((.........))))))...((((.......))))........))))))))))))...)) ( -25.50) >DroSec_CAF1 2544 92 - 1 UAUCCUCCUCGCAUCACAUUUUCGUCUCCAGUGCUCACUUCCUGCGCUGACCACCACUCAAAAUGGUGACGAUGCGGAUGAAAAUGUUCAGC ..........((...((((((((((((.((((((.........))))))..(((((.......))))).......))))))))))))...)) ( -27.90) >DroSim_CAF1 2830 92 - 1 UAUCAUUCUCGCAUCACAUUUUCGUCUCCAGUGCUCACUUCCUGCGCUGACCACCACUCAGAAUGGUGACGAUGCGGAUGAAAAUGUUCAGC ..........((...((((((((((((.((((((.........))))))..(((((.......))))).......))))))))))))...)) ( -27.90) >DroEre_CAF1 2494 90 - 1 --UUAUCCUUCCAUCACAUGUUUGUCUUCAGUGCUCACUUCCUGCGCUGACCACCACUCAGAAUGGUGACGAUGCGGAUGAAUAUGUUCAAC --.............(((((((..((((((((((.........))))))).(((((.......))))).......)))..)))))))..... ( -25.90) >DroYak_CAF1 2954 92 - 1 UAUUAUCCUUGCAUCACAUGUUUGUCUUCAGUGCUCACUUCCUGCGCUGACCGCCACUCAGAAUGGUGACGAUGCGAAUGAAUAUGUUCAGC ........(((((((............(((((((.........))))))).(((((.......)))))..))))))).((((....)))).. ( -25.10) >DroAna_CAF1 2372 86 - 1 UAUUAUCCCUGGAUCACAUGUUCUU------GGUUUACUUCCUGCGCUGACCACCACUCAGAAUGGUGACGAUGCGGAUGAAGAUGUUCAGU ........((((((..((......)------).....((((.(.(((....(((((.......))))).....))).).))))..)))))). ( -18.50) >consensus UAUUAUCCUCGCAUCACAUGUUCGUCUCCAGUGCUCACUUCCUGCGCUGACCACCACUCAGAAUGGUGACGAUGCGGAUGAAUAUGUUCAGC ...............((((((((((((.((((((.........))))))..(((((.......))))).......))))))))))))..... (-20.18 = -21.02 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:04 2006