| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,936,476 – 10,936,577 |
| Length | 101 |
| Max. P | 0.593713 |
| Location | 10,936,476 – 10,936,577 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 80.65 |
| Mean single sequence MFE | -30.83 |
| Consensus MFE | -26.12 |
| Energy contribution | -24.90 |
| Covariance contribution | -1.22 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.593713 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10936476 101 + 22224390 --CACUUCCUCUUCAUUUGCCUUUAAUCGCUUAGGCGACCAUUGCUUCGCUGGCGCUGGUCAUUGGUAGUGGAGCAGUUGCCCGCUCGAUUGAGUACCAGCCG --...................((((((((....((((((...((((((((((.((........)).))))))))))))))))....))))))))......... ( -29.90) >DroSec_CAF1 1858 101 + 1 --CACUUCCUCUUUAUUUGCCUUCAAUCGCUUAGGCGACCAUUGCUUCGCUGGCGCUGGUUAUCGGUAGCGGAGCAGUUGCCCGCUCCAUUGAGUACCAGCCG --..........................(((..(((((........))))))))((((((..((((((((((.((....)))))))..)))))..)))))).. ( -32.50) >DroSim_CAF1 2160 101 + 1 --CACUUCCUCUUCAUUUGCCUUCAAUCGCUUAGGCGACCAUUGCUUCGCUGGCGCUGGUUAUCGGUAGCGGAGCAGUUGCCCGCUCCAUUGAGUACCAGCCG --..........................(((..(((((........))))))))((((((..((((((((((.((....)))))))..)))))..)))))).. ( -32.50) >DroEre_CAF1 1775 100 + 1 --CACUACCU-UCCAUUUCCCUACAAUCGCUUAGGCGACCAUUGCUUCGCUGGCUCUGGUCAUCGGUAGCGGAGCAGUGGCCCGCUCCAUUGAGUACCAGCCG --........-......................(((..((((((((((((((.(..........).))))))))))))))...((((....))))....))). ( -32.10) >DroWil_CAF1 361 93 + 1 CACACUUUCAUUUU----------AUUCUGACAGUGGAGUAUUGCAUCGCUUGCGCUGGUCAUUGGCAGCGGUGCUGUCGCUCGUUCUAUUGAGUAUCAGCCU ..((((.(((....----------....))).)))).......(((.....)))((((((....((((((...))))))(((((......))))))))))).. ( -27.40) >DroYak_CAF1 2250 90 + 1 --CACUACCU-UCC----------AAUCGCUUAGGCGACCAUUGCUUCGCUGGCUCUGGUCAUUGGUAGCGGAGCCGUGGCCCGUUCUAUUGAGUACCAGCCG --........-...----------.........((((((((..(((.....)))..)))))..(((((((((.((....))))))((....)).)))))))). ( -30.60) >consensus __CACUUCCUCUUCAUUUGCCUUCAAUCGCUUAGGCGACCAUUGCUUCGCUGGCGCUGGUCAUCGGUAGCGGAGCAGUUGCCCGCUCCAUUGAGUACCAGCCG ..........................((((....)))).....(((.....)))((((((..((((((((((.((....)))))))..)))))..)))))).. (-26.12 = -24.90 + -1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:03 2006