Locus 4163

Sequence ID X_DroMel_CAF1
Location 10,919,614 – 10,919,723
Length 109
Max. P 0.663081
window6835

overview

Window 5

Location 10,919,614 – 10,919,723
Length 109
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 77.49
Mean single sequence MFE -38.84
Consensus MFE -18.24
Energy contribution -18.86
Covariance contribution 0.61
Combinations/Pair 1.29
Mean z-score -2.07
Structure conservation index 0.47
SVM decision value 0.27
SVM RNA-class probability 0.663081
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10919614 109 + 22224390
CAGCCACUGUCCCAGGGGCUCCAUCCCAUGAUCGUGCUCCUCGGAUCCCGGCUCCUUGGCCAACGUAAGAUUCAGUUGGUAUCUAACGCCAGGAAUAGGCAGUGGACAA
..(((((((((((((((((.(.(((....))).).)))))).)).(((.(((......((((((..........)))))).......))).)))...)))))))).).. ( -43.42)
>DroSec_CAF1 2660 109 + 1
CAGCCACUGUCCCAGGGGCUCCACCUCAUGCUCUUGCUGCUCGGAUCCGUGUUCCUUGGCUAACGUAAGAUUAAAUUGGUAUCUUACGCCAGGAACAGGCAGUGGACAA
..(((((((((.(((((((..........))))))).............(((((((.(((....(((((((.........))))))))))))))))))))))))).).. ( -41.00)
>DroSim_CAF1 3666 109 + 1
CAGCCAUUGUCCCAGGGGCUCCUCCCCAUGCUGGUGCUCCUCGGAUCCCUGCUCCUUGGCCAACGUAAGAUUCAGUUGGUAUCUAAUGCCAGGAACAGGCAGUGGACAA
..((((((((((.((((((.((..........)).)))))).)))..((((.((((.(((...(....).....(((((...)))))))))))).)))))))))).).. ( -40.10)
>DroEre_CAF1 2660 109 + 1
CAGCCACUGUCCCAGGGGCUCCUCCUCAUGCUGCUGCUCCUCGGAUCCCCUCUCCUUGGCCAAAGUAAGAUUCAGUUGGUAUCUAACCCCGGGAACAGGCAGUGCACAA
..((.((((((..(((((.(((.......((....)).....))).))))).((((.((.....((.((((((....)).)))).)))).))))...)))))))).... ( -31.40)
>DroYak_CAF1 2708 109 + 1
CAACCACUGUCCAAGCAGCGCCUCCUCCGGCUGGUGCUCCUCGGAUCCCUGGCCCUUGGCCAGUGUAAGAUUCAGUUGGUAUCUAACCCCGGGAACAGGCAGUGGACAA
...((((((((...(((.((((......))).).)))(((.(((....((((((...)))))).((.((((((....)).)))).)).))))))...)))))))).... ( -42.60)
>DroAna_CAF1 2678 91 + 1
UAGCCACUGUCCCAGAGGGGCCACU------------UCCUCGGAGUCACC------AUCCAACGUGAGGUUCAGUUGGUAUCUGACACCAGGCACUGGGAGGGAGCAC
..((..((.((((((.((((.....------------.))))((.((((..------..(((((.((.....)))))))....)))).)).....)))))).)).)).. ( -34.50)
>consensus
CAGCCACUGUCCCAGGGGCUCCACCUCAUGCUGGUGCUCCUCGGAUCCCUGCUCCUUGGCCAACGUAAGAUUCAGUUGGUAUCUAACGCCAGGAACAGGCAGUGGACAA
...((((((((((((.(((................))).)).)).(((..........((((((..........))))))...........)))...)))))))).... (-18.24 = -18.86 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:55 2006