| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,918,699 – 10,918,809 |
| Length | 110 |
| Max. P | 0.528966 |
| Location | 10,918,699 – 10,918,809 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 80.61 |
| Mean single sequence MFE | -43.90 |
| Consensus MFE | -26.61 |
| Energy contribution | -26.40 |
| Covariance contribution | -0.21 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.61 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.528966 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10918699 110 - 22224390 GCGGUAAUGGAGCACCCAUUGCUCUCUACAAUCUGGAGGCACUCCAGGCGAGGAGCGACAUUCGCCGGAGGCGCAGAAG---------AAGGCGCCGCAAUAGCGGUGGAUCACUAGAG ..((((((((.....))))))))(((((...((((...((.((((.((((((........)))))))))))).))))..---------....((((((....))))))......))))) ( -43.90) >DroSec_CAF1 1748 107 - 1 GCGGUAAUGGAGCACCUAUUGCCCUCUACAAUCUGGAGGCACUCCAGGCGAGAAGCGACAUUCGCCGGAGGCGUAGAAG---------AAGGC---GCAACAGCGGUGGGUCACUGGAA ((((((((((.....))))))))(((((.....)))))))..(((((((.....))(((...(((((...((((.....---------...))---)).....))))).))).))))). ( -39.80) >DroSim_CAF1 2754 107 - 1 GCGGUAAUGGAGCACCUAUUGCCCUCUACAACCUGGAGGCACUCCAGGCGAGAAGCGACAUUCGCCGGAGGCGUAGAAG---------AAGGC---GCAAUAGCGGUGGGUCAUUGGAA ((((((((((.....)))))))).(((....(((((((...)))))))..))).))(((...(((((...((((.....---------...))---)).....))))).)))....... ( -38.90) >DroEre_CAF1 1745 110 - 1 GCGGCAAUGGAGCACCCAUCGCCCUCUACAAUCUGGAGGCCCUCCAGGCGCGCAGCGACAUCCGCCGGAAGCGCAGAAG---------AAGGCGACGCAAUAGCGGUGGAUCCCUGGAG (((((.((((.....)))).)))(((((.....))))))).((((((((((...)))..(((((((....((((.....---------...))).)((....))))))))).))))))) ( -43.00) >DroYak_CAF1 1793 110 - 1 GCGGUAAUGGAGCACCCAUUGCCCUCUACAAUUUGGAGGCACUCCAGGCGAGGAAUGACAACCGCCGAAAGCGCAGAAG---------AAGGCGCCGCAAUAGCGGCGGAUCAUUGGAG ((((((((((.....))))))))(((((.....))))))).((((((..(((......)..(((((....((((.....---------...)))).((....))))))).)).)))))) ( -42.80) >DroAna_CAF1 1772 113 - 1 GGGGCAAUGGAGCCGCCAUCGUCCUCUACAACCUGGAGGCACUCCAGGCCCGGAGCA------GCCGGAGGCGGAGACGUCGCCGGCGAAGGCAUGCAGAGAGCGGGGGAUCCGUGGAG .((((.((((.....)))).))))(((((..(((((((...)))))))(((...((.------(((((.((((....)))).)))))....))..((.....)))))......))))). ( -55.00) >consensus GCGGUAAUGGAGCACCCAUUGCCCUCUACAAUCUGGAGGCACUCCAGGCGAGGAGCGACAUUCGCCGGAGGCGCAGAAG_________AAGGCG_CGCAAUAGCGGUGGAUCACUGGAG ..((((((((.....))))))))(((((...(((((((...)))))))...........((((((((.....((......................)).....))))))))...))))) (-26.61 = -26.40 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:53 2006