Locus 4158

Sequence ID X_DroMel_CAF1
Location 10,908,233 – 10,908,333
Length 100
Max. P 0.500000
window6829

overview

Window 9

Location 10,908,233 – 10,908,333
Length 100
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 79.71
Mean single sequence MFE -23.64
Consensus MFE -15.60
Energy contribution -15.72
Covariance contribution 0.11
Combinations/Pair 1.23
Mean z-score -1.23
Structure conservation index 0.66
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10908233 100 - 22224390
UCGCAUUUUUAGAAAAUGUAUUCAGUGCAGGGGCGACAUUCGCA---GCGGCAACGAAAGCGACAGCCAUAGCAUACCC----AUCCAUCUACC--UAUACACUUGCAC
..((((((.....)))))).....((((((((((.....((((.---.((....))...))))..)))((((.......----..........)--)))...))))))) ( -25.03)
>DroGri_CAF1 1547 80 - 1
UCACUUUUUCAGAAAAUGUAUUCAGUGCAGGGGCGACAUUCGCA---GCGGCAACGAAAGCGACAGCCAUAAUACA--C----AAACAC--------------------
...........(((......))).(((....(((.....((((.---.((....))...))))..)))......))--)----......-------------------- ( -16.00)
>DroSim_CAF1 6285 100 - 1
UCGCAUUUUUAGAAAAUGUAUUCAGUGCAGGGGCGACAUUCGCA---GCGGCAACGAAAGCGACAGCCAUAGCAUACCC----AUCCAUCCACC--UAUACACUUGCAC
..((((((.....)))))).....((((((((((.....((((.---.((....))...))))..)))((((.......----..........)--)))...))))))) ( -25.03)
>DroEre_CAF1 4964 95 - 1
UCGCAUUUUUAGA-AAUGUAUUCAGUGCAGGGGCGACAUUCGCA---GCGGCAACGAAAGCGACAGCCAUAGCAU--------ACCCAUCCACC--CACACACUUGCAC
..((((((....)-))))).....((((((((((.....((((.---.((....))...))))..)))...(...--------...).......--......))))))) ( -23.80)
>DroYak_CAF1 6831 104 - 1
UCGCAUUUUUAGAAAAUGUAUUCAGUGCAGGGGCGACAUUCGCA---GCGGCAACGAAAGCGACAGCCAUAGCAUAUCUCUAUACCCAUCCACC--CACACACUUGCAC
..((((((.....)))))).....((((((((((.....((((.---.((....))...))))..)))((((.......))))...........--......))))))) ( -26.00)
>DroAna_CAF1 7374 97 - 1
----A-UUUUGGAAAAUGUAUUCAGUGCAGGGGCGACAUUCGCAUUUGCGGCAACGAAACCGACAGCCAUAGCGAC-------UGUCAUCGCCCAACACACACUCGCAC
----.-..................(((...((((((..(((((....))(....))))...(((((.(.....).)-------)))).))))))..))).......... ( -26.00)
>consensus
UCGCAUUUUUAGAAAAUGUAUUCAGUGCAGGGGCGACAUUCGCA___GCGGCAACGAAAGCGACAGCCAUAGCAUA__C____ACCCAUCCACC__CACACACUUGCAC
........................((((...(((.....((((.....((....))...))))..)))...)))).................................. (-15.60 = -15.72 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:48 2006