| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,895,876 – 10,895,967 |
| Length | 91 |
| Max. P | 0.585354 |
| Location | 10,895,876 – 10,895,967 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 77.77 |
| Mean single sequence MFE | -10.10 |
| Consensus MFE | -6.42 |
| Energy contribution | -6.42 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.585354 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10895876 91 + 22224390 AAAUAUAAAUUGCAUUGUGCAAUAAUCUUCAAAGUGCAACAAAGUAAGAAAAACAACAACAUCAUCUGCAGUUGCAACAACAAUGGCAGCA .........((((.(((((((.............))).)))).))))..................((((.((((......)))).)))).. ( -13.52) >DroVir_CAF1 28980 74 + 1 AAAUAUAAAUUGCAUUGUGCAAUAAUCUUCAAAGUGCAACAAAGUAAAAACAACAACAAGA-----GG------------CAGAAGCAUCA .........((((.(((((((.............))).)))).))))............((-----.(------------(....)).)). ( -8.92) >DroEre_CAF1 26643 91 + 1 AAAUAUAAAUUGCAUUGUGCAAUAAUCUUCAAAGUGCAACAAAGUAAGAAAAACAACAACACCAUCCGCAGUUGCAACAACAAUGGCAGCA .........((((.(((((((.............))).)))).)))).......................(((((..........))))). ( -11.82) >DroWil_CAF1 9632 76 + 1 AAAUAUAAAUUGCAUUGUGCAAUAAUCUUUAAAGUGCAACAAAGUAAAAACAAGAACCA-------AGAAGCUCCCACA--------AGCU ........(((((.....)))))..((((.....(((......))).....))))....-------...((((......--------)))) ( -9.20) >DroYak_CAF1 50398 91 + 1 AAAUAUAAAUUGCAUUGUGCAAUAAUCUUCAAAGUGCAACAAAGUAAGAAAAACAACAACAUCAUCUGCAGAUGCAACAACAAUGGCAGCA .........((((.(((((((.............))).)))).))))..................((((...((......))...)))).. ( -10.72) >DroMoj_CAF1 25652 73 + 1 AAAUAUAAAUUGCAUUGUGCAAUAAUCUUCAAAGUGCAACAAAGUAAAACCAACAACAACA-----A-------------CAAUGUCAUGA .........((((.(((((((.............))).)))).))))..............-----.-------------........... ( -6.42) >consensus AAAUAUAAAUUGCAUUGUGCAAUAAUCUUCAAAGUGCAACAAAGUAAAAAAAACAACAACA_____AGCAG_UGCAACA_CAAUGGCAGCA .........((((.(((((((.............))).)))).))))............................................ ( -6.42 = -6.42 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:43 2006