Locus 4152

Sequence ID X_DroMel_CAF1
Location 10,891,475 – 10,891,567
Length 92
Max. P 0.568804
window6820

overview

Window 0

Location 10,891,475 – 10,891,567
Length 92
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 77.64
Mean single sequence MFE -16.42
Consensus MFE -4.85
Energy contribution -5.69
Covariance contribution 0.84
Combinations/Pair 1.07
Mean z-score -1.84
Structure conservation index 0.30
SVM decision value 0.07
SVM RNA-class probability 0.568804
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10891475 92 - 22224390
AAAAGCACUGGUUAAUCCACUAUAAAU---------------UGAUUAACUUCAUUUUAAUACGCUUUCCGCGGGUAUUUUAAUAUUAUUUGCUA-----------CCUGCAGUUAUC
.(((((..(((.....)))...((((.---------------(((......))).))))....)))))..(((((((...(((......))).))-----------)))))....... ( -17.90)
>DroSec_CAF1 45454 92 - 1
AAAAGCACUGGUUAAUCCACUACAAAU---------------UGAUUAACUUAAUUUUAAUACUCUUUCCGCGGAUAUUUUAAUAUUAUUUGCUA-----------CCUACAGUAAUC
......(((((((((((..........---------------.)))))))....................(((((((.........)))))))..-----------....)))).... ( -13.50)
>DroSim_CAF1 48450 106 - 1
AAAAGCACUGGUUAAUCCACUAUAAAUUGAUUAACUAUAAAUUGAUUAACUUAAUCUUAAUACGCUUUCCGCGG-UAUUUUAAUAUUAUUUGCUA-----------CCUACAGUUAUC
...((((.(((((((((...........)))))))))..............((((.((((..(((.....))).-....)))).))))..)))).-----------............ ( -14.00)
>DroEre_CAF1 22390 98 - 1
AAAUGCACUGAUUAAACCACUAUAAAU---------------UGAUUAACUUCAUUUUAAUACGCUUUCCGCGGGUACUUUCAUAUUAUUUCCUG-----CAGUUAGCUGUACUAAAU
...((((((((((.........((((.---------------(((......))).))))...........(((((................))))-----))))))).))))...... ( -15.99)
>DroYak_CAF1 46009 103 - 1
AAAAGCACUGGUUAAUCCACUAUAAAU---------------UGAUUAACUCCAUUAUUAUACGCUUUCUGCGGGUGUUUCAAUAUUAUUUACUAGGUACUAUUUACCUGCAAUAAUC
..(((((((((((((((..........---------------.))))))))...........(((.....))))))))))....((((((...((((((.....)))))).)))))). ( -20.70)
>consensus
AAAAGCACUGGUUAAUCCACUAUAAAU_______________UGAUUAACUUCAUUUUAAUACGCUUUCCGCGGGUAUUUUAAUAUUAUUUGCUA___________CCUGCAGUAAUC
......(((((((((((..........................)))))))............(((.....))).....................................)))).... ( -4.85 =  -5.69 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:40 2006