Locus 415

Sequence ID X_DroMel_CAF1
Location 1,206,078 – 1,206,175
Length 97
Max. P 0.979249
window639

overview

Window 9

Location 1,206,078 – 1,206,175
Length 97
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 76.92
Mean single sequence MFE -20.05
Consensus MFE -11.07
Energy contribution -11.85
Covariance contribution 0.78
Combinations/Pair 1.18
Mean z-score -2.55
Structure conservation index 0.55
SVM decision value 1.83
SVM RNA-class probability 0.979249
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1206078 97 - 22224390
GACCUAACCUCAAAAAUACAGCCC-----AACAAUAUUCGGUUAAAUUCCAGAUCCGAAAUCACCCACACC--------AAGUGGGCCUAGGA-CUUGACCUGCCCACACC
........................-----.......(((((.............)))))............--------..((((((..(((.-.....)))))))))... ( -18.32)
>DroSec_CAF1 15737 97 - 1
AACCUAACCUCAAGGCUACAGCCC-----AACAAUAUUCGGUUAAAUUCCAGAUCAGAAAUCACCCACACC--------AAGUGGGCCUAGGA-CUUGACCCGCCCACAUC
.............(((....))).-----..........((((((..(((.(((.....))).(((((...--------..)))))....)))-.)))))).......... ( -20.60)
>DroSim_CAF1 8318 97 - 1
AACCUAACCUCAAGGCUACAGCCC-----AACAAUAUUCGGUUAAAUUCCAGAUCAGAAAUCACCCACACC--------AAGUGGGCCUAGGA-CUUGACCCGCCCACAUC
.............(((....))).-----..........((((((..(((.(((.....))).(((((...--------..)))))....)))-.)))))).......... ( -20.60)
>DroEre_CAF1 16404 97 - 1
CACCUAACCUCAAAGCUACAGCCC-----AACAAUAUUCGGUUAAAUUCCAGAUCAGAUAUCACCCACAAC--------AAGUGGGUCUAGGA-CUUGACCUGCCCACAUC
..............((....))..-----..........((((((..(((.(((.....)))((((((...--------..))))))...)))-.)))))).......... ( -18.70)
>DroYak_CAF1 20409 97 - 1
CACCUAACCUCAAAGCUACAACCC-----AGCAAUAUUCGGUUAAAUUCCGGAACAGAUAUCACCCACAAC--------AAGUGGGUCUAGGA-CUUGACCUGCCCACAAC
..((((...((...(((.......-----)))....(((((.......)))))...))....((((((...--------..)))))).)))).-................. ( -19.40)
>DroMoj_CAF1 31436 103 - 1
CCUAUAACCUCAAAUCUAA-GCCAAUAGAACUAAUAUACAGUGGAGUUUUG--UC--AUAUUCCCAGCAAAACUAAAUACAGCAGGUAUAUGAGGUUGUCCCG---AUAGC
...((((((((...((((.-.....))))....((((((.(((.(((((((--(.--.........))))))))...))).....))))))))))))))....---..... ( -22.70)
>consensus
CACCUAACCUCAAAGCUACAGCCC_____AACAAUAUUCGGUUAAAUUCCAGAUCAGAAAUCACCCACAAC________AAGUGGGCCUAGGA_CUUGACCCGCCCACAUC
.......................................((((((..(((.(((.....))).(((((.............)))))....)))..)))))).......... (-11.07 = -11.85 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:03 2006