Locus 4149

Sequence ID	X_DroMel_CAF1
Location	10,887,360 – 10,887,460
Length	100
Max. P	0.994817

overview

Window 4

Location	10,887,360 – 10,887,460
Length	100
Sequences	4
Columns	115
Reading direction	forward
Mean pairwise identity	82.23
Mean single sequence MFE	-26.02
Consensus MFE	-22.30
Energy contribution	-22.55
Covariance contribution	0.25
Combinations/Pair	1.00
Mean z-score	-2.68
Structure conservation index	0.86
SVM decision value	2.51
SVM RNA-class probability	0.994817
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10887360 100 + 22224390
CAGCAGAGUGGCAAAUAUUUGCCGCAUAGGCAAACUUGUGCCACUGCCCCAGGACAUC---------------CCAUCCCGUUCCAAACCUAUCUAUCCACUUGCACGUCCACAU
..(((((((((((....((((((.....))))))....)))))))......((.....---------------))..........................)))).......... ( -25.30)
>DroSec_CAF1 41261 115 + 1
CAGCAGAGUGGCAAAUAUUUGCCGCAUAGGCAAACUUGUGCCACUGCCUCAGGACAUCGCAUCCUAACCCAUCCCAACCCGCUCCAACCCUAUCCAUCCACUUGCACGUCCACAU
..((((.(((((((....)))))))...((((......)))).))))....((((...(((.........................................)))..)))).... ( -27.48)
>DroSim_CAF1 44234 115 + 1
CAGCAGAGUGGCAAAUAUUUGCCGCAUAGGCAAACUUGUGCCACUGCCCCAGGACAUCGCAUCCUAAUCCAUCCCAACCCGCUCCAACCCUAUCCAUCCACUUGCACGUCCACAU
..((((.(((((((....)))))))...((((......)))).))))....((((...(((.........................................)))..)))).... ( -27.48)
>DroEre_CAF1 18232 104 + 1
CAGCUGAGUGGGAAAUAUUUGCCGCAUAGGCAAACUUGUGCCACUGCCCCAGGACACACCACC------C-----AUCCCAUCCCACCCGAUUCCAUCCACAUGCACGUCCACGA
..((((.((((((....((((((.....))))))..((((((.........)).)))).....------.-----......))))))..(((...)))..)).)).((....)). ( -23.80)
>consensus
CAGCAGAGUGGCAAAUAUUUGCCGCAUAGGCAAACUUGUGCCACUGCCCCAGGACAUCGCAUC______C___CCAACCCGCUCCAACCCUAUCCAUCCACUUGCACGUCCACAU
..((..(((((((....((((((.....))))))....)))))))))....((((....................................................)))).... (-22.30 = -22.55 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:32 2006