Locus 4148

Sequence ID X_DroMel_CAF1
Location 10,881,960 – 10,882,058
Length 98
Max. P 0.548902
window6813

overview

Window 3

Location 10,881,960 – 10,882,058
Length 98
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 97.04
Mean single sequence MFE -29.62
Consensus MFE -28.74
Energy contribution -29.18
Covariance contribution 0.44
Combinations/Pair 1.04
Mean z-score -1.08
Structure conservation index 0.97
SVM decision value 0.03
SVM RNA-class probability 0.548902
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10881960 98 + 22224390
ACUCUUAGCCCGGGAUAUGGCCAUUAAGUUGGCCUUUUUACGACCACAGUAGUCCUAGAUGGUGCGUAUGUCUGUCGGCCAGGACAUGCCCACUAUGC
.........(..((((..(((((......)))))....(((.......)))))))..)((((((.((((((((........)))))))).)))))).. ( -32.40)
>DroSec_CAF1 36480 98 + 1
ACUCUUAGCCCGGGAUAUGGCCAUUAAGUUGGCCUUUUUACGACCACAGUAGUUCUAGAUGGUGCGUAUGUCUGUCGGCCAGGACAUGCCCACUAUGC
.........(..((((..(((((......)))))....(((.......)))))))..)((((((.((((((((........)))))))).)))))).. ( -29.50)
>DroSim_CAF1 37832 98 + 1
ACUCUUAGCCCGGGAUAUGGCCAUUAAGUUGGCCUUUUUACGACCACAGUAGUCCUAGAUGGUGCGUAUGUCUGUCGGCCAGGACAUGCCCACUAUGC
.........(..((((..(((((......)))))....(((.......)))))))..)((((((.((((((((........)))))))).)))))).. ( -32.40)
>DroEre_CAF1 12365 98 + 1
ACUCUUAGCCCGGGAUAUGGCCAUUAAGUUGGCCUUUUUACGACCACAGUAGUCCUAGAUGGUGCGUAUGUCUGUCUGCCAGGACAUGCCCACUAUAC
.........(..((((..(((((......)))))....(((.......)))))))..)((((((.((((((((........)))))))).)))))).. ( -32.40)
>DroYak_CAF1 36767 98 + 1
ACUCUUAGCCCGGGAUAUGGCCAUUAAGUUGGGCUUUUUACGACCACAGUAGUCCUAGAUGUUGCGUAUGUCUGUCUGCCAGGACAUGCCCACUACUC
.......(((........))).....(((.((((....(((.......)))(((((((((((.....)))))).......)))))..))))))).... ( -21.41)
>consensus
ACUCUUAGCCCGGGAUAUGGCCAUUAAGUUGGCCUUUUUACGACCACAGUAGUCCUAGAUGGUGCGUAUGUCUGUCGGCCAGGACAUGCCCACUAUGC
.........(..((((..(((((......)))))....(((.......)))))))..)((((((.((((((((........)))))))).)))))).. (-28.74 = -29.18 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:31 2006