Locus 4144

Sequence ID X_DroMel_CAF1
Location 10,871,912 – 10,872,006
Length 94
Max. P 0.572776
window6808

overview

Window 8

Location 10,871,912 – 10,872,006
Length 94
Sequences 3
Columns 111
Reading direction forward
Mean pairwise identity 80.30
Mean single sequence MFE -31.33
Consensus MFE -22.87
Energy contribution -22.87
Covariance contribution 0.01
Combinations/Pair 1.16
Mean z-score -1.49
Structure conservation index 0.73
SVM decision value 0.08
SVM RNA-class probability 0.572776
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10871912 94 + 22224390
------------AAGAGGGGGGGCGUGGAAAGAGGGGUAUUUUGUG--UGGGGGG---GGGGGGCGUGACACUGCUAGACCAGGCCUCGCAAACAAAUAAGCCAAAUUAAU
------------.....................((..(((((..((--(((((..---((..((((......))))...))...)))))))...)))))..))........ ( -22.30)
>DroSec_CAF1 26640 108 + 1
ACAAACGCACAGAUAAUCAGGGGCGUGGAAAGAGGGGUGUUUUUGGGGCGUGGGG---UAGGGGCGUGGCACUGCUAGACCAGGCCCCACAAACAAAUAAGCCAAAUUAAU
....((((.(.(.....).)..))))((......(..(((((.((((((.(((..---(((.((.......)).)))..))).)))))).)))))..)...))........ ( -34.30)
>DroSim_CAF1 28055 111 + 1
ACAAACGCACUGAUAAUCAGGGGCGUGGAAAGAGGGGUGUUUUUGGGGCGUGGGGGUUUAGGGGCGUGGCACUGCUAGACCAGGCCCCACAAACAAAUAAGCCAAAUUAAU
....((((.(((.....)))..))))((......(..(((((.((((((.....(((((((.((.......)).)))))))..)))))).)))))..)...))........ ( -37.40)
>consensus
ACAAACGCAC_GAUAAUCAGGGGCGUGGAAAGAGGGGUGUUUUUGGGGCGUGGGG___UAGGGGCGUGGCACUGCUAGACCAGGCCCCACAAACAAAUAAGCCAAAUUAAU
...................(((((.(((....((.((((((......(((..............))))))))).))...))).)))))....................... (-22.87 = -22.87 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:26 2006