Locus 4142

Sequence ID X_DroMel_CAF1
Location 10,870,008 – 10,870,104
Length 96
Max. P 0.909762
window6804

overview

Window 4

Location 10,870,008 – 10,870,104
Length 96
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 74.95
Mean single sequence MFE -25.31
Consensus MFE -13.91
Energy contribution -15.67
Covariance contribution 1.75
Combinations/Pair 1.18
Mean z-score -1.94
Structure conservation index 0.55
SVM decision value 1.07
SVM RNA-class probability 0.909762
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10870008 96 + 22224390
UUCAGUCAUCCAUCUCAAAACGCA-------UACCAGGGACUUUUAGCAAAUCUCUCCAGCAUAAGCCGAUGUCUCAAUUCUGAUCUGGUGAUGGAUGGCCUU
....((((((((((..........-------.(((((((.(((...((...........))..)))))...(((........))))))))))))))))))... ( -24.10)
>DroSec_CAF1 24331 103 + 1
UGCAGUCAUCUAUCUCAAAACGCAUUCCCCAUGCCAGGGACUUUCAGCACAUCUCUCCACCAUAAGCCGAUGUCUCAAUUCUGAUCUGGUGAUGGAUGGCAUU
....(((((((((((((....((((.....))))..(((((..((.((.................)).)).)))))..........))).))))))))))... ( -25.93)
>DroSim_CAF1 25564 103 + 1
UGCAGUCAUCUAUCUCAAAACGCAUUCCCCAUGCCAGGGACUUUCAGCAAAUCUCUCCACCAUAAGCCGAUGUCUCAAUUCUGAUCUGGUGAUGGAUGGCCUU
....(((((((((((((....((((.....))))..(((((..((.((.................)).)).)))))..........))).))))))))))... ( -25.03)
>DroEre_CAF1 1006 101 + 1
UGCAGUCAUCCAUCUCAAAACGCAUCC-CCUUC-CAGGGACUUUCAGCAAAUCUCUGCAGCAUAAGCCGAUGUCUCAAUUGUGAUCUGGUGAUGGAUGGCCUU
....((((((((((.......((.(((-(....-..))))......(((......))).))....((((..(((.(....).))).))))))))))))))... ( -30.50)
>DroYak_CAF1 24454 102 + 1
UGCAGUCAUCCAUCUCGAAACGCAUCC-CCUUCCCAGGGACAUUCAGCAAAUCUCUGCAGCAUAAGCCAAUGUCUCAAUUCUGAUCUGGUGAUGGAUGGCCUU
....((((((((((.......((...(-(((....)))).......(((......))).))....((((..(((........))).))))))))))))))... ( -30.80)
>DroPer_CAF1 45679 75 + 1
UCAACAGCCCCCGCUCAA--C----------UGUGGGAAACCUUUACCAACUCCCUCGAAC---------------CAUCUUGAUAUGCUGAUGGGUGCCUU-
(((.((((.(((((....--.----------.)))))..................((((..---------------....))))...)))).))).......- ( -15.50)
>consensus
UGCAGUCAUCCAUCUCAAAACGCAU_C_CC_UGCCAGGGACUUUCAGCAAAUCUCUCCAGCAUAAGCCGAUGUCUCAAUUCUGAUCUGGUGAUGGAUGGCCUU
....((((((((((.....................(((((...........))))).........((((..(((........))).))))))))))))))... (-13.91 = -15.67 +   1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:22 2006