Locus 4140

Sequence ID X_DroMel_CAF1
Location 10,867,352 – 10,867,447
Length 95
Max. P 0.922851
window6801

overview

Window 1

Location 10,867,352 – 10,867,447
Length 95
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 73.82
Mean single sequence MFE -21.52
Consensus MFE -3.78
Energy contribution -5.90
Covariance contribution 2.12
Combinations/Pair 1.12
Mean z-score -1.94
Structure conservation index 0.18
SVM decision value 1.15
SVM RNA-class probability 0.922851
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10867352 95 + 22224390
UGCCU-GGCAAUUCAAUCUGCUA----ACUCCAUUUAGCAACCAAUCUGCGAGCCCAAGAUU-UACCCUUAAUCAGGCUUUU-GACGGAAUUUUCCGGCCAC
....(-(((...((((..(((((----(......))))))..........(((((...((((-.......)))).)))))))-))((((....)))))))). ( -23.50)
>DroSec_CAF1 20990 95 + 1
UGCCU-GGCAAUUCAAUCUGCUA----ACUCCAUUUAGCAACCAAUCUGCUAGCCCAGGAUU-CACCCUUAAUCAGGCUUUG-GACGGAAUUUUCCGGCCAC
.((((-((((........)))..----..(((..((((((.......))))))....)))..-..........)))))..((-(.((((....)))).))). ( -24.80)
>DroSim_CAF1 22510 95 + 1
UGCCU-GGCAAUUCAAUCUGCUA----ACUCCAUUUAGCAACCAAUCUGCUAGCCCAGGAUU-CACCCUUAAUCAGGCUUUG-GACGGAAUUUUCCGGCCAC
.((((-((((........)))..----..(((..((((((.......))))))....)))..-..........)))))..((-(.((((....)))).))). ( -24.80)
>DroYak_CAF1 21127 97 + 1
---CA-GGCAAUUCAAACUACUAACUAACUACAUUUACCAACCAAUCUGCGAGCCCAGAAUG-CAUCCUUAAUCAGACUUUGAGGCGGAAUUUUCCGGCCAC
---..-(((.................................((.((((......)))).))-...((((((.......))))))((((....))))))).. ( -16.90)
>DroAna_CAF1 19618 83 + 1
UGCCAGGGCAAUAUGGGUUGCUA----AUUCCAUUAACCAGCCAAUCUCCUGCCCCU-AAUGGAACACUUUUCCUCGCUUCU-CUAGGA-------------
.((.((((((((....)))))..----.((((((((..(((........)))....)-))))))).......))).))....-......------------- ( -17.60)
>consensus
UGCCU_GGCAAUUCAAUCUGCUA____ACUCCAUUUAGCAACCAAUCUGCUAGCCCAGGAUU_CACCCUUAAUCAGGCUUUG_GACGGAAUUUUCCGGCCAC
.((((.((((........)))).......................((((......))))...............)))).......((((....))))..... ( -3.78 =  -5.90 +   2.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:20 2006