Locus 414

Sequence ID X_DroMel_CAF1
Location 1,205,461 – 1,205,569
Length 108
Max. P 0.526846
window638

overview

Window 8

Location 1,205,461 – 1,205,569
Length 108
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 80.66
Mean single sequence MFE -49.03
Consensus MFE -31.73
Energy contribution -34.03
Covariance contribution 2.31
Combinations/Pair 1.16
Mean z-score -1.39
Structure conservation index 0.65
SVM decision value -0.01
SVM RNA-class probability 0.526846
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1205461 108 - 22224390
ACAGCGCCCGC----------ACUGCUAUCCUUGGACGGCACCCGGCAGGUGGAUCAGCGCCACCUACUGGGGCUCUUACGUGGUGCAGCGGACAUCGAAGAGCAGGUGCAGCAGCUG
.((((((..((----------(((((..((....))..)).(((((.((((((.......)))))).)))))((((((.((..((.(...).))..)))))))).))))).)).)))) ( -48.80)
>DroSec_CAF1 15119 108 - 1
ACAGCGCCCGC----------ACUGCUAUCCUUGGACGGCACCCGGCAGGUGGAUCAGGGCCAUCUACUGGGGCUCCUGCGUGGUGCAGCUGACAUCGAAGAGCAGGUGCAGCAGCUG
.((((((((((----------..(((..((....))..)))(((((.((((((.......)))))).)))))((....)))))).)).((((.((((........)))))))).)))) ( -49.50)
>DroSim_CAF1 7701 108 - 1
ACAGCGCCCGC----------ACUGCUAUCCUUGGACGGCACCCGGCAGGUGGAUCAGGGCCAUCUACUGGGGCUCCUGCGUGGUGCAGCUGACAUCGAAGAGCAGGUGCAGCAGCUG
.((((((((((----------..(((..((....))..)))(((((.((((((.......)))))).)))))((....)))))).)).((((.((((........)))))))).)))) ( -49.50)
>DroEre_CAF1 15786 108 - 1
CCAGCGCCCGC----------ACUGCUCUCCUUGGACGGCACCCAGCUGGUGGAUCAGGGCCAGCUCCUGGGGCUCCUGCGAGGUGCAGCGGACAUCGAAGAGCAGGUGCUGCAGCUG
.((((((..((----------(((((((((..((..(((((((..((.((.(..((((((....).)))))..).)).))..)))))..))..))..).)))))).)))).)).)))) ( -49.80)
>DroYak_CAF1 19792 108 - 1
CCAGCGCCCAC----------ACUGCUCUCCUUGGACGGCACCCGACUGGCGGAUCAGGGGCAUCUCCUGGGUCUGCUGCGAGGUGCAGCGGACAUCGAAGAGCAGGUGCUGCAGCUG
.((((((.(((----------.((((((((..((..(((((((((...(((((((((((((...))))).)))))))).)).)))))..))..))..).))))))))))..)).)))) ( -54.00)
>DroPer_CAF1 63583 118 - 1
UCACCACCCGCCGACCAGCGAUCUGCAAUCAGUGGACGGCACCAGGCAGCUCGACCAGGAGGCUUUGCUCAGUCAGCUGCGCGGCGCGGAGAGCAUCGAGCAACAGGUGCAACUACUG
......(((((((....((..((..(.....)..))..)).....((((((.(((...(((......))).))))))))).))))).))...(((((........)))))........ ( -42.60)
>consensus
ACAGCGCCCGC__________ACUGCUAUCCUUGGACGGCACCCGGCAGGUGGAUCAGGGCCAUCUACUGGGGCUCCUGCGUGGUGCAGCGGACAUCGAAGAGCAGGUGCAGCAGCUG
...((((((((............(((..((....))..)))(((((.((((((.......)))))).)))))......))).))))).((((.((((........))))))))..... (-31.73 = -34.03 +   2.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:03 2006