Locus 4139

Sequence ID X_DroMel_CAF1
Location 10,866,709 – 10,866,829
Length 120
Max. P 0.607794
window6800

overview

Window 0

Location 10,866,709 – 10,866,829
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 96.53
Mean single sequence MFE -28.05
Consensus MFE -25.19
Energy contribution -25.50
Covariance contribution 0.31
Combinations/Pair 1.03
Mean z-score -1.67
Structure conservation index 0.90
SVM decision value 0.15
SVM RNA-class probability 0.607794
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10866709 120 - 22224390
AAUGCUGUACUACUUUAUGGAAUAGUACGUAUGUAUUUAUGUUCGCAUGGUGAGAGGGACACAGAUACAAAUCGUAAUCCAAAGGCAACGAAAAAUCCGCAUAAUAAAGUGGAUCCGCAU
.((((.(..((((((((((((....((((..(((((((.(((((............))))).)))))))...)))).)))...(....)..............)))))))))..).)))) ( -29.50)
>DroSec_CAF1 20349 120 - 1
AAUGCUGUACUACUUUAUGGAAUAGUACGUCUGUAUUUAUGUUCGCAUGUUGAAAGGGACACAGAUACAAAUCGUAAUCCAAAGGCAACGAAAAAUCCGCAUAAUAAAGUGGAUCCGCAU
.((((.(..((((((((((((....((((..(((((((.(((((............))))).)))))))...)))).)))...(....)..............)))))))))..).)))) ( -29.50)
>DroSim_CAF1 21873 120 - 1
AAUGCUGUACUACUUUAUGGAAUAGUACGUAUGUAUUUAUGUUCGCAUGUUGAAAGGGACACAGAUACAAAUCGUAAUCCAAAGGCAACGAAAAAUCCGCAUAAUAAAGUGGAUCCGCAU
.((((.(..((((((((((((....((((..(((((((.(((((............))))).)))))))...)))).)))...(....)..............)))))))))..).)))) ( -29.50)
>DroYak_CAF1 20503 120 - 1
AAUGCUGUACAACGUUAUAGAAUAGUACGUAUGUAUUUAUGCUCGCAUGGUGAAAGGGACGCAGAUACAAAUCGUAAUCCAAAGGCAACGAAAAAUCCGCAUAAUAAAGUGGAUCCGCAU
.((((.......((((.........((((..(((((((.(((((.(.....)...))).)).)))))))...))))..........))))....((((((........))))))..)))) ( -23.71)
>consensus
AAUGCUGUACUACUUUAUGGAAUAGUACGUAUGUAUUUAUGUUCGCAUGGUGAAAGGGACACAGAUACAAAUCGUAAUCCAAAGGCAACGAAAAAUCCGCAUAAUAAAGUGGAUCCGCAU
.((((............((((....((((..(((((((.(((((............))))).)))))))...)))).))))..(....).....((((((........))))))..)))) (-25.19 = -25.50 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:19 2006