Locus 4137

Sequence ID X_DroMel_CAF1
Location 10,866,335 – 10,866,449
Length 114
Max. P 0.961992
window6798

overview

Window 8

Location 10,866,335 – 10,866,449
Length 114
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.30
Mean single sequence MFE -27.96
Consensus MFE -23.00
Energy contribution -23.48
Covariance contribution 0.48
Combinations/Pair 1.06
Mean z-score -2.00
Structure conservation index 0.82
SVM decision value 1.53
SVM RNA-class probability 0.961992
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10866335 114 - 22224390
GCCCCAUAAAUGGC--AACUAUUUAACUAACUUGAACUUGCAAAUUGAGGCUAAAGUCU---GGGCCAAGAAAAAAGCGAAAACUUUUCACUGCCCAUUGCCAA-AACAAGUGUCAAGUG
(((........)))--.............(((((((((((.......((((....))))---((((..((..(((((......)))))..))))))........-..))))).)))))). ( -26.60)
>DroSec_CAF1 19975 114 - 1
GCGCCAUAAAUGGC--AACUAUUUAACUAACUUGAACUUGCAAAUUGAGGGUAAAGUCU---GGGCCAAGAAAAAAGCGAAAACUUUUCACUGCCCAUUGCCAA-AACAAGUGUCAAGUG
..((((....))))--.............(((((((((((....((...(((((....(---((((..((..(((((......)))))..))))))))))))..-))))))).)))))). ( -28.90)
>DroSim_CAF1 21499 114 - 1
GCGCCAUAAAUGGC--AACUAUUUAACUAACUUGAACUUGCAAAUUGAGGCUAAAGUCU---GGGCCAAGAAAAAAGCGAAAACUUUUCACUGCCCAUUGCCAA-AACAAGUGUCAAGUG
..((((....))))--.............(((((((((((.......((((....))))---((((..((..(((((......)))))..))))))........-..))))).)))))). ( -28.50)
>DroYak_CAF1 20129 114 - 1
GCCCCAUAAAUGGC--AACUAUUUAACUAACUUGAACUUGCAAAUUGAGGCUAAAGUCU---GGGCCAAGAAAAAAGCGAAAACUUUUCACUGCCCAUUGCCAA-AACAAGUGUCAAGUG
(((........)))--.............(((((((((((.......((((....))))---((((..((..(((((......)))))..))))))........-..))))).)))))). ( -26.60)
>DroAna_CAF1 18725 119 - 1
GCGGCUUAAAUGGCACAACUAUUUAACUAACUUGAACUCACAAAUCGAGGCUAAAGUCUUUGGGGCCAAGGA-GAGGCGCUAACUUUUCACUGCCCAUUGCCAAAAACAAGUGUCAAGUG
..((.((((((((.....)))))))))).((((((...(((.....(((((....)))))..((((...(((-(((.......))))))...))))..............))))))))). ( -29.20)
>consensus
GCGCCAUAAAUGGC__AACUAUUUAACUAACUUGAACUUGCAAAUUGAGGCUAAAGUCU___GGGCCAAGAAAAAAGCGAAAACUUUUCACUGCCCAUUGCCAA_AACAAGUGUCAAGUG
......(((((((.....)))))))....(((((((((((.......((((....))))...((((..((..(((((......)))))..))))))...........))))).)))))). (-23.00 = -23.48 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:17 2006