Locus 4135

Sequence ID X_DroMel_CAF1
Location 10,865,473 – 10,865,572
Length 99
Max. P 0.711117
window6796

overview

Window 6

Location 10,865,473 – 10,865,572
Length 99
Sequences 3
Columns 99
Reading direction forward
Mean pairwise identity 93.94
Mean single sequence MFE -15.39
Consensus MFE -13.85
Energy contribution -13.63
Covariance contribution -0.22
Combinations/Pair 1.05
Mean z-score -1.94
Structure conservation index 0.90
SVM decision value 0.38
SVM RNA-class probability 0.711117
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10865473 99 + 22224390
AUAUAACUAGUGUUCAUCCCUUGUAGACCCAAAGAUUUGUGUUUAAACAAGUACUUAACCCUAGUUAAGAAUUUACAUCAUCUCUAAGCAAAUCUAAUU
...(((((((.(((.....(((((((((.(((....))).))))..))))).....))).)))))))................................ ( -14.70)
>DroSec_CAF1 19128 99 + 1
AUAUAACUAGCGCUCAACCCUUUAAGCUCGAAAGAUUUGUGUUUAAACAAGUACUUAACCCUAGUUAAGAACUUACAUCAUCUCUAAGCAAAUCUAAUU
......(.(((..............))).)..((((((((((....))((((.((((((....)))))).)))).............)))))))).... ( -15.74)
>DroSim_CAF1 20639 99 + 1
AUAUAACUAGCGCUCAACCCUUUAAGCUCGAAAGAUUUGUGUUUAAACAAGUACUUAACCCUAGUUAAGAACUUACAUCAUCUCUAAGCAAAUCUAAUU
......(.(((..............))).)..((((((((((....))((((.((((((....)))))).)))).............)))))))).... ( -15.74)
>consensus
AUAUAACUAGCGCUCAACCCUUUAAGCUCGAAAGAUUUGUGUUUAAACAAGUACUUAACCCUAGUUAAGAACUUACAUCAUCUCUAAGCAAAUCUAAUU
................................((((((((((....))((((.((((((....)))))).)))).............)))))))).... (-13.85 = -13.63 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:15 2006