Locus 4132

Sequence ID X_DroMel_CAF1
Location 10,862,472 – 10,862,570
Length 98
Max. P 0.515818
window6788

overview

Window 8

Location 10,862,472 – 10,862,570
Length 98
Sequences 4
Columns 116
Reading direction forward
Mean pairwise identity 84.03
Mean single sequence MFE -21.03
Consensus MFE -13.48
Energy contribution -14.29
Covariance contribution 0.81
Combinations/Pair 1.04
Mean z-score -1.62
Structure conservation index 0.64
SVM decision value -0.03
SVM RNA-class probability 0.515818
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10862472 98 + 22224390
AAUAUUGAAAACUACUAUAUAUGG-A-----------------UGUUUGGAUAUAGGUGAAAAUGUUGGUUGGUGCACAGGGCGAAGUCAAACCAAUUGGCAAAAGUAAAUUUCAU
.....(((((..((((...(((..-(-----------------(((....))))..)))....(((..((((((..((........))...))))))..)))..))))..))))). ( -19.30)
>DroSec_CAF1 16241 99 + 1
AAUAUUGAAAACUACUAUAUAUGGUA-----------------UUUUUGAAUAUAGGUGAAAAUGUUGGUUGGUGCGCAGGGCGAAGUCAAACCAAUUGGCAAAAGUAAAUUUCAU
.(((((.((((.(((((....)))))-----------------.)))).)))))..((((((.(((..((((((.(((...))).......))))))..)))........)))))) ( -22.10)
>DroSim_CAF1 18207 99 + 1
AAUAUUGAAAACUACUAUAUAUGGUA-----------------UUUUUGAAUAUAGGUGAAAAUGUUGGUUGGUGCGCAGGGCGAAGUCAAACCAAUUGGCAAAAGUAAAUUUCAU
.(((((.((((.(((((....)))))-----------------.)))).)))))..((((((.(((..((((((.(((...))).......))))))..)))........)))))) ( -22.10)
>DroYak_CAF1 16378 112 + 1
AAUAUUGAAAACUACUAUAUGUACUAUAUAUACUAUAUAUGAAAGUUUGAAUAUAGGUAGAUAUGUUG----GUGUGUAGGGCGAAGUCAAACCAAUUGGCAAAAGUAAAUUUCAU
.....(((((..((((.((..((((((((((.((((((((....))....))))))....))))).))----)))..)).......(((((.....)))))...))))..))))). ( -20.60)
>consensus
AAUAUUGAAAACUACUAUAUAUGGUA_________________UGUUUGAAUAUAGGUGAAAAUGUUGGUUGGUGCGCAGGGCGAAGUCAAACCAAUUGGCAAAAGUAAAUUUCAU
.....(((((..((((.(((((............................)))))........(((..((((((......(((...)))..))))))..)))..))))..))))). (-13.48 = -14.29 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:07 2006