Locus 4130

Sequence ID X_DroMel_CAF1
Location 10,858,435 – 10,858,526
Length 91
Max. P 0.558430
window6786

overview

Window 6

Location 10,858,435 – 10,858,526
Length 91
Sequences 4
Columns 91
Reading direction forward
Mean pairwise identity 93.59
Mean single sequence MFE -23.98
Consensus MFE -19.71
Energy contribution -19.65
Covariance contribution -0.06
Combinations/Pair 1.11
Mean z-score -1.62
Structure conservation index 0.82
SVM decision value 0.05
SVM RNA-class probability 0.558430
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10858435 91 + 22224390
GCUCGAAGUGAUGCACUGCAAAUAAGUGGGCAAAUUUAUUCGCAUCCCCAGGCGAUGCUUCUGAUCACUUAGCAAUUUUAUGCUCAUAGAA
(((..(((((((((.(..(......)..)))..........((((((....).))))).....))))))))))..((((((....)))))) ( -23.20)
>DroSec_CAF1 12227 91 + 1
GCUCGGAGUGAUGCACUGCAAAUAAAUGGGCAAAUUUAUUGGCAUCCCCAGGCGAUGCUUCUGAGCAUUUAGCAAUUUUAUGCUCAUAGAA
((..((.(.(((((......(((((((......))))))).))))))))..))........(((((((..(....)...)))))))..... ( -24.60)
>DroSim_CAF1 14273 91 + 1
GCUCGGAGUGAUGCACUGCAAAUAAAUGGGCAAAUUUAUUCGCAUCCCCAGGCGAUGCUUCUGAGCAUUUAGCAAUUUUAUGCUCAUAGAA
((((((((((.(((..(((.(((((((......))))))).))).......))).))).)))))))....((((......))))....... ( -23.50)
>DroYak_CAF1 12498 91 + 1
GCUUGGAGUGAUGCACUGCAAAUAAAUGGACAAAUUUAUUCGCAUCCCCAGGCGAUGCUUCUGAACGUUUAGCAUUUUUAUGCUCAUGCAA
((((((.(.(((((......(((((((......))))))).))))))))))))((((((...........))))))....(((....))). ( -24.60)
>consensus
GCUCGGAGUGAUGCACUGCAAAUAAAUGGGCAAAUUUAUUCGCAUCCCCAGGCGAUGCUUCUGAGCAUUUAGCAAUUUUAUGCUCAUAGAA
((((((((((.(((..(((.(((((((......))))))).))).......))).)))))).))))....((((......))))....... (-19.71 = -19.65 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:05 2006