Locus 413

Sequence ID X_DroMel_CAF1
Location 1,204,246 – 1,204,366
Length 120
Max. P 0.742765
window637

overview

Window 7

Location 1,204,246 – 1,204,366
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.67
Mean single sequence MFE -40.30
Consensus MFE -28.86
Energy contribution -29.03
Covariance contribution 0.17
Combinations/Pair 1.37
Mean z-score -1.77
Structure conservation index 0.72
SVM decision value 0.45
SVM RNA-class probability 0.742765
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1204246 120 + 22224390
CUUCAACGACUGGCUGCGCAUCCUGGAGGCACAGUCCUUCUACAUCGGCGUGUACGUGCUCAUCGGCAUCAGCAUUGUAAUGAUGGCCGUCAGCUUCCUCGGCUGCCUGAGCGCGCUCAU
.......((((((((.(........).))).))))).............(((..((((((((.((((((((.........)))).)))).(((((.....)))))..))))))))..))) ( -37.90)
>DroVir_CAF1 27997 120 + 1
CUUCAAUGACUGGCUGCGCAUAUUGGAGGCUCAGUCGUUUUACAUUGGCGUCUAUGUGCUGAUUGCCAUUAGCAUUAUCAUGAUGGCGGUCAGCUUUCUGGGCUGCCUUAGUGCCCUCAU
....(((((((((((.(........).))).)))))))).(((...((((((((...((((((((((((((.........))))))))))))))....))))).)))...)))....... ( -44.30)
>DroGri_CAF1 19170 120 + 1
CUUCAAUGACUGGUUGCGCAUAUUGGAGGCGCAGUCGUUUUAUAUUGGCGUCUAUGUGCUAAUUGCCAUCAGCAUCAUUAUGAUGGCAAUUAGCUUCUUGGGCUGCCUCAGCGCACUCAU
..........((..(((((......(((((...((((........))))(((((...((((((((((((((.........))))))))))))))....))))).))))).)))))..)). ( -48.50)
>DroWil_CAF1 5710 120 + 1
UUUCAAUGAUUGGCUACGGAUUCUGGAAGCUCAGUCGUUCUACAUUGGCGUUUAUAUAUUGAUUGGCAUCAGUAUCAUCAUGAUGGCGGUUACAUUUUUGGGCUGUCUAAGUGCCUUGAU
....(((((((((((.(((...)))..))).))))))))...((..((((((((.((((((((....)))))))).........(((((((.((....))))))))))))))))).)).. ( -29.30)
>DroMoj_CAF1 28925 120 + 1
CUUCAAUGACUGGUUGCGCAUCCUGGAGGCGCAGGCCUUUUACAUUGGCGUCUAUGUGCUGAUCGCCAUCAGCAUCAUCAUGAUGGCCGUCAGCUUUCUGGGCUGUCUCAGUGCGCUCAU
...............((((((....(((((....(((.........)))(((((...((((((.(((((((.........))))))).))))))....))))).))))).)))))).... ( -45.90)
>DroAna_CAF1 12937 120 + 1
CUUCAACGACUGGCUCAAGAUCCUGGAGGCUCAGUCCUUCUACAUUGGCGUCUAUGUGCUCAUCGGCAUCAGCAUCGUGAUGAUGGCGGUCAGCUUCCUGGGCUGUCUGAGUGCCUUGAU
..............(((((....((((.((.((((........)))))).)))).(..((((.((.(((((.(.....).))))).))(.(((((.....))))).)))))..)))))). ( -35.90)
>consensus
CUUCAAUGACUGGCUGCGCAUCCUGGAGGCUCAGUCCUUCUACAUUGGCGUCUAUGUGCUGAUCGCCAUCAGCAUCAUCAUGAUGGCGGUCAGCUUCCUGGGCUGCCUCAGUGCCCUCAU
.......((((((((.(........).))).)))))..........((((((((...((((((((.(((((.........))))).))))))))....))))).)))............. (-28.86 = -29.03 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:01 2006