Locus 4122

Sequence ID X_DroMel_CAF1
Location 10,852,135 – 10,852,235
Length 100
Max. P 0.500000
window6771

overview

Window 1

Location 10,852,135 – 10,852,235
Length 100
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 82.07
Mean single sequence MFE -28.82
Consensus MFE -16.65
Energy contribution -17.15
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.98
Structure conservation index 0.58
SVM decision value -0.08
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10852135 100 - 22224390
UCUCUGUCAGGCGCGCUGACAUUUGUCAA--AAGGAAGCCCCCA-AUCCCCGCCAGCCCGC-------CAUCCAACAUUGACAAAUGAAGCCGCAUUCUGCUGCCAUGAA
......(((((((.(((..((((((((((--..((......)).-......((......))-------.........)))))))))).))))((.....)).))).))). ( -25.40)
>DroPse_CAF1 25924 104 - 1
UCAUUGUCAGGCACGCUGACAUUUGUCAA--A-GGCAGCCCCCAGAGCAACGCCAGCACUCCACAAGCAAUCCAGUAUUGACAAAUGAAGCCGCAUUC---UGGCAUGGA
((((.(((((((..(((..((((((((((--.-(((.((.......))...))).((.........)).........)))))))))).))).))...)---)))))))). ( -28.70)
>DroSec_CAF1 6036 100 - 1
UCUCUGUCAGGCGCGCUGACAUUUGUCAA--AAGGAAGACCCCA-AUCCCCGCCAGCCCGC-------CAUCCAACAUUGACAAAUGAAGCCGCAUUCAGCUGCCAUGAA
......(((((((.(((((((((((((((--..((......)).-......((......))-------.........)))))))))).........))))))))).))). ( -26.40)
>DroSim_CAF1 6140 100 - 1
UCUCUGUCAGGCGCGCUGACAUUUGUCAA--AAGGAAGCCCCCA-AUCCCCGCCAGCCCGC-------CAUCCAACAUUGACAAAUGAAGCCGCAUUCUGCUGCCAUGAA
......(((((((.(((..((((((((((--..((......)).-......((......))-------.........)))))))))).))))((.....)).))).))). ( -25.40)
>DroYak_CAF1 6169 95 - 1
UCUCUGUCAGGCGCGGUGACAUUUGUCAAAAAAGGAUGCCCCCA-GCC--CGC-----UGG-------CAUCCAACAUUGACAAAUGAAGCCGCAUUCUGCUGCCAUGAA
......(((((((((((..((((((((((....(((((((...(-(..--..)-----)))-------)))))....))))))))))..)))))........))).))). ( -38.30)
>DroPer_CAF1 26003 104 - 1
UCAUUGUCAGGCACGCUGACAUUUGUCAA--A-GGCAGCCCCCAGAGCAACGCCAGCACUCCACAAGCAAUCCAGUAUUGACAAAUGAAGCCGCAUUC---UGGCAUGGA
((((.(((((((..(((..((((((((((--.-(((.((.......))...))).((.........)).........)))))))))).))).))...)---)))))))). ( -28.70)
>consensus
UCUCUGUCAGGCGCGCUGACAUUUGUCAA__AAGGAAGCCCCCA_AUCCCCGCCAGCCCGC_______CAUCCAACAUUGACAAAUGAAGCCGCAUUCUGCUGCCAUGAA
..........(((.(((..((((((((((....((....................................))....)))))))))).))))))................ (-16.65 = -17.15 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:51 2006