Locus 4115

Sequence ID X_DroMel_CAF1
Location 10,847,851 – 10,847,970
Length 119
Max. P 0.661987
window6762

overview

Window 2

Location 10,847,851 – 10,847,970
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 86.53
Mean single sequence MFE -24.65
Consensus MFE -17.55
Energy contribution -18.55
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.69
Structure conservation index 0.71
SVM decision value 0.27
SVM RNA-class probability 0.661987
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10847851 119 - 22224390
ACACUAGCUAGCAUCUAGCAUAUAGCGACAACAAAGUGCUUUUAUCAUUUUGCGGAUCCCGCAUUAAUUUGAUUAGUAUUUAAUAUCGCAUUAUAAA-GUGAUACAAAUUUUGGGCCGCA
......(((((...))))).....(((.(((..(((((((...((((...(((((...)))))......)))).)))))))..((((((........-))))))......)))...))). ( -28.20)
>DroSec_CAF1 1887 108 - 1
ACACUA----GCAUCUA-------GCGACAACAAAGAGCUUUUAUCAUUUUGCGGAUUCCGCAUUGAUUUGAUUAGUAUUUAAUAUCGCAUUAUAAA-GUGAUACAAAUUUUGGGCCGCA
......----.......-------(((....(((((.(((...((((...(((((...)))))......)))).)))......((((((........-))))))....)))))...))). ( -21.10)
>DroSim_CAF1 1948 115 - 1
ACACUA----GCAUCUAGCAUAUAGCGACAACAAAGUGCUUUUAUCAUUUUGCGGAUCCCGCAUUGAUUUGAUUAGUAUUUAAUAUCGCAUUAUAAA-GUGAUACAAAUUUUGGGCCGCA
......----((.....)).....(((.(((..(((((((...((((...(((((...)))))......)))).)))))))..((((((........-))))))......)))...))). ( -24.30)
>DroYak_CAF1 1984 99 - 1
ACACUG----CCAU----------------ACAAAGUGCUUUUAUCAUUUUGCGGAUCCCGCAUUGAUUUGAUUAGUAUUUAAUAUCGCAUUAAAAAUGUGAUACAAAUU-CGGGCCGCA
.....(----((..----------------...(((((((...((((...(((((...)))))......)))).)))))))..((((((((.....))))))))......-..))).... ( -25.00)
>consensus
ACACUA____GCAUCUA_______GCGACAACAAAGUGCUUUUAUCAUUUUGCGGAUCCCGCAUUGAUUUGAUUAGUAUUUAAUAUCGCAUUAUAAA_GUGAUACAAAUUUUGGGCCGCA
........................(((......(((((((...((((...(((((...)))))......)))).)))))))..((((((.........))))))............))). (-17.55 = -18.55 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:42 2006