Locus 4113

Sequence ID	X_DroMel_CAF1
Location	10,846,266 – 10,846,371
Length	105
Max. P	0.543002

overview

Window 9

Location	10,846,266 – 10,846,371
Length	105
Sequences	4
Columns	115
Reading direction	reverse
Mean pairwise identity	87.19
Mean single sequence MFE	-29.58
Consensus MFE	-21.80
Energy contribution	-23.55
Covariance contribution	1.75
Combinations/Pair	1.00
Mean z-score	-1.44
Structure conservation index	0.74
SVM decision value	0.02
SVM RNA-class probability	0.543002
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10846266 105 - 22224390
CGUAAUUAAAACCGCACGGUAAUGGACUUAGUUGCCCCGGGGCCAACU-CCCAAAAAUCGUA---------UCCAUCCGAAAGAAGGAAACUAUUCGAAUUUGCCGUUGUGCACA
............(((((((((((((....(((((((....)).)))))-.)))......((.---------(((...(....)..))).)).........)))))).)))).... ( -25.40)
>DroSec_CAF1 323 108 - 1
CGUAAUUAAAACCGCACGGUAAUGGACUUAGUGGCCCCGGGGCCAACU-CCCAAAAAUCGUAGCGCCCAAUUCCAUCCGAAUGAAGGAAACUAU------UUGCCGUUGUGCACA
............(((((((((((((......(((((....)))))...-.)))......((((..((..((((.....))))...))...))))------)))))).)))).... ( -27.80)
>DroSim_CAF1 382 114 - 1
CGUAAUUAAAACCGCACCGUAAUGGACUUAGUGGCCCCGGGGCCAACU-CCCAAAAAUCGUAGCGCCCAAUUCCAUCCGAAUGAAGGAAACUAUUCGAAUUUGCCGUUGUGCACA
.((..........((..((...(((......(((((....)))))...-.))).....))..))((.((((..((..(((((..((....)))))))....))..)))).)))). ( -27.00)
>DroYak_CAF1 377 115 - 1
CGUAAUUAAAACCGCACGGUAAUGGACUUAGUGGCCCCAGGGCCAACAAACCAAAAACCGUGGCGCCCAAUUCAAUCCGAAAGGAGAAAACUAUUCGAAUUUGCCGUCGUGCAGA
.............(((((((..(((......(((((....))))).....)))...)))..((((.(.(((((..(((....)))(((.....)))))))).).))))))))... ( -38.10)
>consensus
CGUAAUUAAAACCGCACGGUAAUGGACUUAGUGGCCCCGGGGCCAACU_CCCAAAAAUCGUAGCGCCCAAUUCCAUCCGAAAGAAGGAAACUAUUCGAAUUUGCCGUUGUGCACA
............(((((((((((((......(((((....))))).....)))........................(((((..((....)))))))...))))))).))).... (-21.80 = -23.55 +   1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:39 2006