| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,844,536 – 10,844,632 |
| Length | 96 |
| Max. P | 0.991001 |
| Location | 10,844,536 – 10,844,632 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 88.89 |
| Mean single sequence MFE | -12.33 |
| Consensus MFE | -12.55 |
| Energy contribution | -12.33 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.02 |
| Structure conservation index | 1.02 |
| SVM decision value | 2.24 |
| SVM RNA-class probability | 0.991001 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10844536 96 - 22224390 AAUGAAACGUGCAAAGCAAAUAAACACAUAAAAGUCUAAAUUUAAUGCUAAAAGCUAUUGAAGCAUGUUUGGGUCCAAAGAAAAAAAGAAAAAAAA ..(.((((((((........((.((........)).))..((((((((.....)).)))))))))))))).)........................ ( -12.50) >DroSec_CAF1 23312 95 - 1 AAUGAAACGUGCAAAGCAAAUAAACACAUAAAAGUCUAAAUUUAAUGCUAAAAGCUAUUGAAGCAUGUUUGGG-CCAAAAAACAAAAAAAAAAAAA ..(.((((((((........((.((........)).))..((((((((.....)).)))))))))))))).).-...................... ( -12.50) >DroYak_CAF1 19515 86 - 1 AAUGAAACGUGCAAAGCAAAUAAACACAUAAAAGUCUAAAUUUAAUGCUAAAAGCUAUUGAGGCAUGUUUGGGCCCAAGGAAAAAA---------- ..(.((((((((........((.((........)).))..((((((((.....)).)))))))))))))).)..............---------- ( -12.00) >consensus AAUGAAACGUGCAAAGCAAAUAAACACAUAAAAGUCUAAAUUUAAUGCUAAAAGCUAUUGAAGCAUGUUUGGG_CCAAAGAAAAAAA_AAAAAAAA ..(.((((((((........((.((........)).))..((((((((.....)).)))))))))))))).)........................ (-12.55 = -12.33 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:38 2006