Locus 4111

Sequence ID X_DroMel_CAF1
Location 10,844,205 – 10,844,323
Length 118
Max. P 0.550860
window6757

overview

Window 7

Location 10,844,205 – 10,844,323
Length 118
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 92.74
Mean single sequence MFE -32.03
Consensus MFE -27.54
Energy contribution -27.77
Covariance contribution 0.23
Combinations/Pair 1.06
Mean z-score -1.86
Structure conservation index 0.86
SVM decision value 0.03
SVM RNA-class probability 0.550860
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10844205 118 - 22224390
UUUGUUUACACUCUGCGCUCUCCGUAUUCCAUAGGCGACAUUUUUUAUGGUCCUCAUGGUGGGCCAACAUGCGUC--CCGAUAAGCGAAAUCAAAUGUCAAAGUGAGAAUGUAAACACUC
..((((((((.(((.((((..((..........)).(((((((....((((((.......))))))...(((...--.......))).....)))))))..))))))).))))))))... ( -31.50)
>DroSec_CAF1 22998 120 - 1
UUUUUUUACAAUCUGCGCUUUCCGUAUUCCAUAGGCGACAUUUUUUAUGGUCCUCAUGGUGGGCCAACAUGCGUCCCCCGAUAAGCGAAAUCAAAUGUCAAAGUGAGAAUGUAAACACUC
....((((((.(((.((((((((..........)).(((((((....((((((.......))))))...((((((....)))..))).....)))))))))))))))).))))))..... ( -29.10)
>DroYak_CAF1 19190 118 - 1
UUUGUUUACACUCUGCGCAUUCCGCCAACCAUGGGCGACAUUUUUUAUGGUUCUCAUGGUGGCCCAACAUGCGUC--CCGAUAAGCGAAAUCAAAUGUCAAAGUGAGAAUGUAAACACUC
..((((((((.(((((((((...((((.(((((((...(((.....)))...))))))))))).....)))))).--..((((...(....)...))))......))).))))))))... ( -35.50)
>consensus
UUUGUUUACACUCUGCGCUUUCCGUAUUCCAUAGGCGACAUUUUUUAUGGUCCUCAUGGUGGGCCAACAUGCGUC__CCGAUAAGCGAAAUCAAAUGUCAAAGUGAGAAUGUAAACACUC
..((((((((.(((.(((.....((.........))(((((((....((((((.......))))))...(((............))).....)))))))...)))))).))))))))... (-27.54 = -27.77 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:37 2006