| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,843,344 – 10,843,443 |
| Length | 99 |
| Max. P | 0.570303 |
| Location | 10,843,344 – 10,843,443 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 81.17 |
| Mean single sequence MFE | -28.23 |
| Consensus MFE | -16.40 |
| Energy contribution | -18.07 |
| Covariance contribution | 1.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.570303 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10843344 99 + 22224390 GUCCAUGUGCACAUGUAGU---UGUGUCACUGUGUGUG--------UUUAUCUAGCUUGUUUGUUUGUGGUGGCAUUCAAAUGGUCACUUUACAUUAUGCAAGCAAAUUU ....(((.(((((..((((---......))))..))))--------).)))...((((((.(((....((((((.........))))))..)))....))))))...... ( -27.60) >DroSec_CAF1 22118 107 + 1 GUCCAUGUGCACAUGUAGUGCCUGUGUCACUGUGUGUGUGUGCGUGCUUAUCUAGCUUGUUUGUU---GGUGGCAUUCAAAUAGUCACUUUACAUUAUGCAAGCAAAUUU ...((((((((((..((((((....).)))))..)))))..)))))........((((((.(((.---((((((.........))))))..)))....))))))...... ( -34.20) >DroYak_CAF1 11147 92 + 1 GUCCAUGUG-------------UGUGUCACUGUGUG--CGUGCGUGUUUAUCUAGCUUGUUUGUU---GGUGGCAUUCAAAUGGUCACUCUACAUUAUGCUAGCAAAUUU ...((((..-------------((..(......)..--))..)))).....(((((.....(((.---((((((.........))))))..)))....)))))....... ( -22.90) >consensus GUCCAUGUGCACAUGUAGU___UGUGUCACUGUGUGUG_GUGCGUGUUUAUCUAGCUUGUUUGUU___GGUGGCAUUCAAAUGGUCACUUUACAUUAUGCAAGCAAAUUU ...((((((((((.........)))).))).)))....................((((((.(((....((((((.........))))))..)))....))))))...... (-16.40 = -18.07 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:37 2006