Locus 411

Sequence ID X_DroMel_CAF1
Location 1,189,886 – 1,190,000
Length 114
Max. P 0.500000
window634

overview

Window 4

Location 1,189,886 – 1,190,000
Length 114
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 84.33
Mean single sequence MFE -50.75
Consensus MFE -34.20
Energy contribution -34.58
Covariance contribution 0.37
Combinations/Pair 1.22
Mean z-score -1.48
Structure conservation index 0.67
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1189886 114 + 22224390
UUGUGGCCUGCGGCAUGGGUCUGAACUGCUG------CUGGAGAGGAUUCGCCUGGCCAUGCAGUAAGCUGUAGGCUGGCUUGUAGGUCGUGGCUGCCACCGCAGGAUUGCCUCCAGGCA
....((((((((((...(((....)))((((------((((..(((.....)))..))).)))))..)))))))))).(((((.((((.((..((((....)))).)).)))).))))). ( -50.00)
>DroSec_CAF1 25917 114 + 1
UUGUGGCCUGCGGCAUGGGUCUGAACUGCUG------GUGGAGAGGAUUCGCCUGGCUAUGGAGCAAGCUGUAGGCUGGCUUGUAGGUGGUGGCUGCCACCGCAGGAUUGCCUCCAGGCA
....((((((((((...(.((((....((((------(((((.....)))))).)))..)))).)..)))))))))).(((((.(((..((..((((....)))).))..))).))))). ( -50.70)
>DroEre_CAF1 25158 114 + 1
UUGUGGCCUGCGGCAUGGGCCUGAACUGCUG------CUGGAGAGGAUUCGUCUGGCCAUGGAGCAAGCCGUAGGCUGGCUUGUAAGUGGUGGCUGCCACCGCCGGAUUUCCCCCAGGCA
.....((((((((((.(........))))))------).((.(.(((...(((((((......((((((((.....))))))))....(((((...)))))))))))).)))))))))). ( -49.70)
>DroAna_CAF1 10404 120 + 1
UGGUGGCCGCUGGCAUGGGCCUGAACUGCUGCUGUUGCUGGAGAAGAUUUCCCUGGCCAUAGGGCAGUCCAUAGGGUGGCUUGUAAGUGGUGGCUGCCACGGCGGGAUUACCCCCGGGAA
(((..(((((((..(..((((...((((((.((((.((..(.((.....)).)..)).))))))))))((....)).))))..)...)))))))..)))(((.(((....)))))).... ( -52.60)
>consensus
UUGUGGCCUGCGGCAUGGGCCUGAACUGCUG______CUGGAGAGGAUUCGCCUGGCCAUGGAGCAAGCCGUAGGCUGGCUUGUAAGUGGUGGCUGCCACCGCAGGAUUGCCCCCAGGCA
....((((((((((.(((((.......)))........(((..(((.....)))..))).....)).)))))))))).(((((...(((((((...)))))))(((....))).))))). (-34.20 = -34.58 +   0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:59 2006