| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,827,830 – 10,827,937 |
| Length | 107 |
| Max. P | 0.949863 |
| Location | 10,827,830 – 10,827,937 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 84.22 |
| Mean single sequence MFE | -26.25 |
| Consensus MFE | -19.62 |
| Energy contribution | -19.50 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.75 |
| SVM decision value | 1.40 |
| SVM RNA-class probability | 0.949863 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10827830 107 - 22224390 AGCAGGAGCAGAAGCAGAAGCUGCUUUCUCUGCAGGAGAAAGGGCGUAGAAAGUUGGGCGAUGAGCGGUGGGUGGGAAAACUGGCAGUGGCAAAAAAUGUCAUAUAG .((....((((((((((...)))))...)))))..........((.(((....))).)).....)).((.(((......))).)).((((((.....)))))).... ( -26.40) >DroSec_CAF1 42946 96 - 1 AGCAGGAGCAGAAGCAGAAGCUGCUUUCUCUGCAGGAGAAAGGGCGUAGAAAGUUGGGCG-----------GUGGGAAAACUGGCACUGGCAAAAAAUGUCAUAUAG .((((.((..(((((((...))))))))))))).........(((((.....((..((((-----------((......))).)).)..)).....)))))...... ( -25.20) >DroEre_CAF1 51296 86 - 1 AGCAGGAGCGAAAG-AGAAGCCGCUUUCUCUGCAGGAGAAAGGGCGCAGAAAGUUGGGC--------------------GCUGGCAGUGGCAAAAAAUGUCAUAUAG .((....)).....-....(((.(((((((.....)))))))(((((..........))--------------------)))))).((((((.....)))))).... ( -27.00) >DroYak_CAF1 47104 89 - 1 AGCAGGAGCAGAAGAAGAAGCUGCUUUCUCUGCAGGAGAAAGGGCGUAGAAAGUUGCGCU-----------G-------ACUGGCAGUGGCAAAAAAUGUCAUAUAG .((.((.(((((..(((......)))..))))).........(((((((....)))))))-----------.-------.)).)).((((((.....)))))).... ( -26.40) >consensus AGCAGGAGCAGAAGCAGAAGCUGCUUUCUCUGCAGGAGAAAGGGCGUAGAAAGUUGGGCG___________G_______ACUGGCAGUGGCAAAAAAUGUCAUAUAG .((....))..........(((.(((((((.....))))))).((.(((....))).)).......................))).((((((.....)))))).... (-19.62 = -19.50 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:20 2006