Locus 410

Sequence ID X_DroMel_CAF1
Location 1,188,741 – 1,188,840
Length 99
Max. P 0.823096
window633

overview

Window 3

Location 1,188,741 – 1,188,840
Length 99
Sequences 3
Columns 111
Reading direction reverse
Mean pairwise identity 89.41
Mean single sequence MFE -37.37
Consensus MFE -30.42
Energy contribution -29.76
Covariance contribution -0.66
Combinations/Pair 1.11
Mean z-score -2.49
Structure conservation index 0.81
SVM decision value 0.69
SVM RNA-class probability 0.823096
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1188741 99 - 22224390
CAGCUCCAGCAGUUGGAUCAAUCCAGCAGAACCACAACGAGCACAACCAGCACCACCGCAAAGCCAUUGAGAAAUCAGGCUCUGGG------------CUUGGGAGUGGGA
..(((((....((((((....))))))..........(((((....(((((......))..((((..(((....))))))).))))------------))))))))).... ( -31.80)
>DroSec_CAF1 24633 99 - 1
CAGCUCCAGCAGUUGGAGCAAUCCAGCAGAACCACAACGAGCACAACCAGCACCACCGCAAAGCCAUUGAGAAAUCAGGCUCUGGG------------CUUGGGAGUGGGA
..(((((....((((((....))))))..........(((((....(((((......))..((((..(((....))))))).))))------------))))))))).... ( -34.10)
>DroEre_CAF1 23989 111 - 1
CAGCUCCAGCAGCUGGAGCAAUCCAGCAGAACCACAACGAGCACAACCAGCACCACCGUGAAGCCAUUGAGAAAUCAGGCUUUGGGCUUGGGCUUGGGCUUGGGAGUGGGA
..(((((....((((((....))))))..........(((((....(((((.(((((.(((((((..(((....))))))))))))..))))).))))))))))))).... ( -46.20)
>consensus
CAGCUCCAGCAGUUGGAGCAAUCCAGCAGAACCACAACGAGCACAACCAGCACCACCGCAAAGCCAUUGAGAAAUCAGGCUCUGGG____________CUUGGGAGUGGGA
..((....)).((((((....))))))....((((.....((.......)).(((((.((.((((..(((....))))))).))))..............)))..)))).. (-30.42 = -29.76 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:58 2006