Locus 41

Sequence ID X_DroMel_CAF1
Location 186,096 – 186,192
Length 96
Max. P 0.598330
window50

overview

Window 0

Location 186,096 – 186,192
Length 96
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 76.81
Mean single sequence MFE -24.47
Consensus MFE -13.44
Energy contribution -14.64
Covariance contribution 1.20
Combinations/Pair 1.23
Mean z-score -1.65
Structure conservation index 0.55
SVM decision value 0.13
SVM RNA-class probability 0.598330
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 186096 96 - 22224390
CAGCAAGCAGACAAAGGUGUAGCUCACAACAUUGCAUAAGCGUAGAGAAUCGCAUGAAUGCGCUUCUUAGCUUUUGCAGUAUAAGAAUACAUAUGU-------------
..........(((...(((((..((.....((((((.((((...(((((.((((....)))).))))).)))).))))))....)).))))).)))------------- ( -25.30)
>DroSec_CAF1 16276 96 - 1
CAGCAAGCAGACAAAGGUGUAGCUCAAAACAUUGCAUAAGCGUAGAGAAUCGCAUGAAUGCGCUUCUUAGCUUUUGCAGUACAAGAAUACAUAUGU-------------
..........(((...(((((..((.....((((((.((((...(((((.((((....)))).))))).)))).))))))....)).))))).)))------------- ( -25.30)
>DroSim_CAF1 15053 96 - 1
CAGCAAGCAGACAAAGGUGUAGCUCAAAACAUUGCAUAAGCGUAGAGAAUCGCAUGAAUGCGCUUCUUAGCUUUUGCAGUACAAGAAUACAUAUGU-------------
..........(((...(((((..((.....((((((.((((...(((((.((((....)))).))))).)))).))))))....)).))))).)))------------- ( -25.30)
>DroEre_CAF1 18048 96 - 1
CAGCAACUACUCAAAGGUGUAGCUCAAAGCAUUGCACAAGCGACGGGAACUGCAUGAAUGCGCUUCUCAGUCUGUGCAGUACAAGAAUACAUAUGU-------------
................(((((((.....))((((((((..(...(((((.((((....)))).))))).)..)))))))).......)))))....------------- ( -25.80)
>DroYak_CAF1 15509 96 - 1
CAGCAACUACUCGAAGGUGUAGCUCAAACCAUUGCACAAGCGGCGAGAACUGCAUGAAUGCGCUUCUCAGUCUCUGCAGUACAAGAAUACAUAUGU-------------
..(((.((((.(....).))))........((((((...(.((((((((.((((....)))).))))).))).))))))).............)))------------- ( -22.40)
>DroPer_CAF1 14931 103 - 1
CAGCACCCACUCGAAGGCGCAGCACAAUGCAUUGCACAAGCAAUCAGAAGUACAUGAAUACUCGU--AGGUCUGAGCAU----AGAAUGGAGAUACCACUCGUACAAAC
..((.((........)).)).((...((((.((((....))))(((((..(((..........))--)..)))))))))----.((.(((.....))).))))...... ( -22.70)
>consensus
CAGCAACCACACAAAGGUGUAGCUCAAAACAUUGCACAAGCGUAGAGAAUCGCAUGAAUGCGCUUCUUAGCCUUUGCAGUACAAGAAUACAUAUGU_____________
................(((((.........((((((...((...(((((.((((....)))).))))).))...)))))).......)))))................. (-13.44 = -14.64 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:06 2006