| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,808,607 – 10,808,719 |
| Length | 112 |
| Max. P | 0.530168 |
| Location | 10,808,607 – 10,808,719 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 84.05 |
| Mean single sequence MFE | -37.30 |
| Consensus MFE | -26.14 |
| Energy contribution | -26.17 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.70 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.530168 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10808607 112 + 22224390 CACGAGAUCUCGCGCCUGGUGCGCCAGUAUAUCACCAUGGCGCAGAUCAGUCAGCGCGACAAGCGGGAGCUCAACUAAG-GCAACCAGGAUUGCUUAGCUACUCGCUCUUGCA ..(((((..(((((((((((((((((...........)))))))..))))...))))))...(((((((((......((-((((......)))))))))).)))))))))).. ( -43.10) >DroGri_CAF1 21453 98 + 1 CACGAGAUCUCGCGCCUGGUGCGACAAUAUAUCACCAUGGCCCAGAUCAGUCAGCGCGACAAGCGGGAGCUCAACUAGAUGCAACGAAUAUUA------------CGAAU--- ...(((.((((((((((((((...........))))).)))........(((.....)))..)))))).))).....................------------.....--- ( -26.60) >DroSec_CAF1 23948 100 + 1 CACGAGAUCUCGCGCCUGGUGCGCCAGUACAUAACCAUGGCGCAGAUCAGUCAGCGCGACAAGCGGGAGCUCAACUAAG-GCAACCAGGAUUG------------CUCUUGCA .........(((((((((((((((((...........)))))))..))))...))))))...((((((((....((..(-....).))....)------------))))))). ( -39.00) >DroSim_CAF1 14592 100 + 1 CACGAGAUCUCGCGCCUGGUGCGCCAGUACAUCACCAUGGCGCAGAUCAGUCAGCGCGACAAGCGGGAGCUCAACUAAG-GCAACCAGGAUUG------------CUCUUGCA .....(((((.((((((((((...........))))).)))))))))).(((.....)))..((((((((....((..(-....).))....)------------))))))). ( -40.00) >DroEre_CAF1 28989 100 + 1 CACGAGAUCUCGCGCCUGGUGCGCCAGUACAUCACCAUGGCCCAGAUCAGUCAGCGCGACAAGCGGGAGCUCAACUA-G-GCAACCAGGAUUGCCUAGCUCU----------- ...(((.((((((((((((((...........))))).)))........(((.....)))..)))))).)))..(((-(-((((......))))))))....----------- ( -37.40) >DroYak_CAF1 27770 111 + 1 CACGAGAUCUCGCGUCUGGUGCGCCAGUACAUCACCAUGGCCCAGAUCAGUCAGCGCGACAAGCGGGAGCUCAACUA-G-GCAACUAGGAUUGUUUAGCUAUUUGCUCUCGCA .....(((((.(.((((((((...........))))).)))).))))).(((.....)))..((((((((....(((-(-((((......))))))))......)))))))). ( -37.70) >consensus CACGAGAUCUCGCGCCUGGUGCGCCAGUACAUCACCAUGGCCCAGAUCAGUCAGCGCGACAAGCGGGAGCUCAACUAAG_GCAACCAGGAUUG____________CUCUUGCA ...(((.((((((((((((((...........))))).)))........(((.....)))..)))))).)))......................................... (-26.14 = -26.17 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:16 2006