Locus 4094

Sequence ID X_DroMel_CAF1
Location 10,794,310 – 10,794,428
Length 118
Max. P 0.598795
window6729

overview

Window 9

Location 10,794,310 – 10,794,428
Length 118
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 93.98
Mean single sequence MFE -30.45
Consensus MFE -23.88
Energy contribution -24.88
Covariance contribution 1.00
Combinations/Pair 1.03
Mean z-score -1.96
Structure conservation index 0.78
SVM decision value 0.13
SVM RNA-class probability 0.598795
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10794310 118 - 22224390
GUCAACCGUUUUUAUGCUUGAGGUGAUAUUACAGCUUUU--GUCUGCGCGAUAUAAAAAUAACACUUUGAAAUUGCCCAGCUGCCGUAUUAUUAUCUUGAGGCCGUAAAAACAUUAGCAG
.......(((((((((((..((((((((.(((.((....--(.(((.(((((...(((.......)))...))))).)))).)).))).))))))))..))..)))))))))........ ( -31.80)
>DroSec_CAF1 10789 117 - 1
GUCAAUCGAUUUUAUGCUUGAGGUGAUAUUACAGCUUUU--GUCUGCGCGAUAUGAAAAUAACACUUU-AAAUUGCCCAGCUGCCAUAUUAUUAUCUUGUGGCCGUAAAAACAUUAGCAG
((((.((((........))))..))))......(((..(--(((((.(((((.((((........)))-).))))).)))..((((((.........)))))).......)))..))).. ( -24.70)
>DroEre_CAF1 17050 117 - 1
GUCAAUCGUUUUUAUGCUUGAGGUGAUAUUAUAGCUUU---GUCUGCGCGAUAUAAAAGUAACACUUUGAAAUUGCCCAGCUGCCAUAUUAUUAUCUUGAGGCCGUAAAAACAUUAGCAG
(..(((.(((((((((((..((((((((.(((.((...---(.(((.(((((...((((.....))))...))))).)))).)).))).))))))))..))..))))))))))))..).. ( -35.40)
>DroYak_CAF1 17222 120 - 1
GUCAAUCGUUUUUCUGCUUGAGGUGAUAUUACAGCUUUUGUGGCUGCGCGAUAUAAAAAUAACACUUUGAAAUUGGCCAGCUGCCGUAUUAUUAUCUUGAGGCCGUAAAAACAUUAGCAG
(..(((.(((((((.(((((((((((((.(((.((......(((((.((.(.....(((......))).....).))))))))).))).))))))))).)))).).)))))))))..).. ( -29.90)
>consensus
GUCAAUCGUUUUUAUGCUUGAGGUGAUAUUACAGCUUUU__GUCUGCGCGAUAUAAAAAUAACACUUUGAAAUUGCCCAGCUGCCAUAUUAUUAUCUUGAGGCCGUAAAAACAUUAGCAG
.......(((((((((((((((((((((.(((.((......(.(((.(((((...(((.......)))...))))).)))).)).))).))))))))))))..)))))))))........ (-23.88 = -24.88 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:12 2006