| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,792,086 – 10,792,203 |
| Length | 117 |
| Max. P | 0.513911 |
| Location | 10,792,086 – 10,792,203 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.80 |
| Mean single sequence MFE | -45.55 |
| Consensus MFE | -31.47 |
| Energy contribution | -30.58 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.69 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.513911 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10792086 117 + 22224390 AGAGUGUGGUCA---CCACAAAGCUGGCCAAGAAGAGUUUCGAGAUCGGUGCGGAUCGUCCGCCGCCGGGCAGUGUGGGUAAACUUAAGCUCAGUUCCGAGAUGCGACAGCGGUUGGAGC .((((..(((..---((((...((((.((..(((....)))......(((((((.....))).)))))).))))))))....)))...)))).(((((((..(((....))).))))))) ( -43.30) >DroVir_CAF1 7923 119 + 1 -GACCACAAUAACGGCCACAAAGCUGGCCAAGAAGAGCUUCGAGAUUGGCGCCGAUCGACCGCCGCCGGGCAGCGUCGGCAAGCUGAAGCUCAGCUCGGAGAUGCGCCAACGUCUCGAGC -............(((((......))))).......(((.((((((((((((..(((..((((((.((.....)).)))).(((((.....))))).)).)))))))))..))))))))) ( -49.40) >DroGri_CAF1 8259 119 + 1 -AACGACAAUCACAGCCACAAAGCUGGCGAAGAAGAGCUUCGAGAUUGGCGCUGAUCGUCCGCCGCCAGGCAGUGUCGGCAAACUGAAGCUCAGCUCGGAGAUGCGUCAGCGUUUGGAAC -..((((((((.((((......)))).(((((.....))))).)))))((((((((((((.((((.((.....)).))))...((((.((...)))))).)))).))))))))))).... ( -42.00) >DroWil_CAF1 7665 120 + 1 AAUCCAUGGUUACCACCACAAAGUUGGCCAAGAAAAGCUUUGAAAUCGGUGCUGAUCGCCCGCCACCGGGUAGUGUGGGCAAGCUUAAACUGAGCUCCGAGAUGCGCCAACGCCUGGAAC ..((((.(((........(((((((..........))))))).....(((((...((((((((.((......)))))))).(((((.....)))))..))...)))))...))))))).. ( -40.60) >DroMoj_CAF1 9053 119 + 1 -AACCACAAUUACAGCCACGAAGCUGGCGAAGAAGAGCUUUGAGAUUGGGGCCGACCGGCCGCCGCCGGGCAGCGUGGGCAAGCUGAAGCUCAGCUCGGAGAUGCGCCAGCGCCUGGAGC -.....(((((.((((......)))).(((((.....))))).))))).((((....))))((..((((((.((.(((((((((((.....)))))......))).))))))))))).)) ( -46.00) >DroAna_CAF1 9007 120 + 1 AGAGUGUCGUCACGACCACCAAGCUGGCCAAGAAGAGCUUCGAGAUCGGAGCCGAUCGCCCGCCUCCGGGCAGCGUGGGCAAGCUGAAGCUCAGCUCCGAGAUGCGCCAGCGCCUGGAGC ...(.((((...))))).(((.((((((......((((((((.(((((....)))))((((((((......)).))))))....)))))))).((........))))))))...)))... ( -52.00) >consensus _AACCACAAUCACAGCCACAAAGCUGGCCAAGAAGAGCUUCGAGAUCGGCGCCGAUCGCCCGCCGCCGGGCAGCGUGGGCAAGCUGAAGCUCAGCUCCGAGAUGCGCCAGCGCCUGGAGC ...............(((....((((((......(((((((..(.((((((.((......)).)))))).)(((........)))))))))).((........))))))))...)))... (-31.47 = -30.58 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:07 2006