| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,784,065 – 10,784,155 |
| Length | 90 |
| Max. P | 0.995908 |
| Location | 10,784,065 – 10,784,155 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 94.05 |
| Mean single sequence MFE | -24.38 |
| Consensus MFE | -22.92 |
| Energy contribution | -23.36 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.94 |
| SVM decision value | 2.63 |
| SVM RNA-class probability | 0.995908 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10784065 90 + 22224390 CAUUUCUCUCAGUGCAUUUUCGCACCCUUCGUAAA-AAGGUGCGAGUUUGCACCAACGUCUCGUUUUUGGUUCGGUUUCCGUAGCUUACUG ...........(((((..((((((((.........-..))))))))..))))).........((....(((((((...))).)))).)).. ( -25.20) >DroSec_CAF1 153 91 + 1 CAUUUCUCCCAGUGCAUUUUCGCACCCUCUGUAAAAAAGGUGCGAGUUUGCACCAACGUUUCGUUUUUGGUUCGGUUUCCGUAGCUUACUG ...........(((((..((((((((............))))))))..))))).........((....(((((((...))).)))).)).. ( -25.10) >DroSim_CAF1 199 91 + 1 CAUUUCUCCCAGUGCAUUUUCGCACCCUCUGUAAAAAAGGUGCGAGUUUGCACCAACGUCUCGUUUUUGGUUCGGUUUCCGUAGCUUACUG ...........(((((..((((((((............))))))))..))))).........((....(((((((...))).)))).)).. ( -25.10) >DroEre_CAF1 6985 90 + 1 CAUUUCUCCCAGUGCAUUUUCGCACCCUCUGUAAA-AAGGUGCGAGUUUGCACCAUCGUCUCGUUUUUGGUUCGGUUUCCGUAGCCCACUG ...........(((((..((((((((.........-..))))))))..)))))...............(((((((...))).))))..... ( -26.80) >DroYak_CAF1 6924 90 + 1 CAUUUCUCGCAGUGCAUUUUCGCACCCUGCGUAAA-AAGGUGCGAUUUAGCAGCAACGUCUCGUUUUUGGUUCGGUUUCCGUAGCUUACUG ........((..(((....(((((((.........-..)))))))....)))))........((....(((((((...))).)))).)).. ( -19.70) >consensus CAUUUCUCCCAGUGCAUUUUCGCACCCUCUGUAAA_AAGGUGCGAGUUUGCACCAACGUCUCGUUUUUGGUUCGGUUUCCGUAGCUUACUG ...........(((((..((((((((............))))))))..))))).........((....(((((((...))).)))).)).. (-22.92 = -23.36 + 0.44)
| Location | 10,784,065 – 10,784,155 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 94.05 |
| Mean single sequence MFE | -26.62 |
| Consensus MFE | -21.88 |
| Energy contribution | -22.28 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.56 |
| Structure conservation index | 0.82 |
| SVM decision value | 2.39 |
| SVM RNA-class probability | 0.993314 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10784065 90 - 22224390 CAGUAAGCUACGGAAACCGAACCAAAAACGAGACGUUGGUGCAAACUCGCACCUU-UUUACGAAGGGUGCGAAAAUGCACUGAGAGAAAUG ..........(((...)))................(..(((((...(((((((((-((...)))))))))))...)))))..)........ ( -26.50) >DroSec_CAF1 153 91 - 1 CAGUAAGCUACGGAAACCGAACCAAAAACGAAACGUUGGUGCAAACUCGCACCUUUUUUACAGAGGGUGCGAAAAUGCACUGGGAGAAAUG ..........(((...)))..((...((((...))))((((((...((((((((((......))))))))))...))))))))........ ( -28.00) >DroSim_CAF1 199 91 - 1 CAGUAAGCUACGGAAACCGAACCAAAAACGAGACGUUGGUGCAAACUCGCACCUUUUUUACAGAGGGUGCGAAAAUGCACUGGGAGAAAUG ..........(((...)))..((...((((...))))((((((...((((((((((......))))))))))...))))))))........ ( -28.00) >DroEre_CAF1 6985 90 - 1 CAGUGGGCUACGGAAACCGAACCAAAAACGAGACGAUGGUGCAAACUCGCACCUU-UUUACAGAGGGUGCGAAAAUGCACUGGGAGAAAUG ...(((....(((...)))..))).........(..(((((((...(((((((((-(.....))))))))))...)))))))...)..... ( -27.80) >DroYak_CAF1 6924 90 - 1 CAGUAAGCUACGGAAACCGAACCAAAAACGAGACGUUGCUGCUAAAUCGCACCUU-UUUACGCAGGGUGCGAAAAUGCACUGCGAGAAAUG ((((.(((.(((.....................))).)))((....(((((((((-.......)))))))))....))))))......... ( -22.80) >consensus CAGUAAGCUACGGAAACCGAACCAAAAACGAGACGUUGGUGCAAACUCGCACCUU_UUUACAGAGGGUGCGAAAAUGCACUGGGAGAAAUG ..........(((...)))..................((((((...(((((((((........)))))))))...)))))).......... (-21.88 = -22.28 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:05 2006