Locus 4087

Sequence ID X_DroMel_CAF1
Location 10,782,453 – 10,782,587
Length 134
Max. P 0.974223
window6719 window6720

overview

Window 9

Location 10,782,453 – 10,782,547
Length 94
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 95.97
Mean single sequence MFE -25.00
Consensus MFE -21.60
Energy contribution -21.60
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.94
Structure conservation index 0.86
SVM decision value 0.03
SVM RNA-class probability 0.548222
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10782453 94 + 22224390
UUCAUUUGAUGUUUCUGUUGUUUUGGGCAUAAAUAUUUAUGUCUGUGU------GUGUGCUAAAGGCAUUUGCCGCAAAUCAGGUGAAAGUUUUGCCUGA
((((((((((..............((((((((....))))))))(((.------((((((.....))))..)))))..))))))))))............ ( -23.20)
>DroSec_CAF1 31927 98 + 1
UUCAUUUGAUGUUUCUGUUGUUUUGGGCAUAAAUAUUUAUGUCUGUGUGU--GUGUGUGCUAAAGGCAUUUGCCGCAAAUCAGGUGAAAGUUUUGCCUGA
((((((((((..............((((((((....)))))))).((((.--(((.((((.....)))).))))))).))))))))))............ ( -25.90)
>DroSim_CAF1 30667 100 + 1
UUCAUUUGAUGUUUCUGUUGUUUUGGGCAUAAAUAUUUAUGUCUGUGUGUGUGUGUGUGCUAAAGGCAUUUGCCGCAAAUCAGGUGAAAGUUUUGCCUGA
((((((((((..............((((((((....))))))))...((((.(((.((((.....)))).))))))).))))))))))............ ( -25.90)
>consensus
UUCAUUUGAUGUUUCUGUUGUUUUGGGCAUAAAUAUUUAUGUCUGUGUGU__GUGUGUGCUAAAGGCAUUUGCCGCAAAUCAGGUGAAAGUUUUGCCUGA
((((((((((..............((((((((....)))))))).............(((....(((....)))))).))))))))))............ (-21.60 = -21.60 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 0

Location 10,782,493 – 10,782,587
Length 94
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 93.22
Mean single sequence MFE -27.93
Consensus MFE -24.90
Energy contribution -24.90
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -3.49
Structure conservation index 0.89
SVM decision value 1.73
SVM RNA-class probability 0.974223
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10782493 94 + 22224390
GUCUGUGU------GUGUGCUAAAGGCAUUUGCCGCAAAUCAGGUGAAAGUUUUGCCUGAGAAAAGGCAAAGACAAAACAAAAACAACAACAGCAACAUC
(.((((.(------((.(((.....)))((((((.....(((((..(.....)..))))).....))))))............)))...)))))...... ( -26.70)
>DroSec_CAF1 31967 95 + 1
GUCUGUGUGU--GUGUGUGCUAAAGGCAUUUGCCGCAAAUCAGGUGAAAGUUUUGCCUGAGAAAAGGCAAAGACAAAACAAAAACAACAAC---AACAGC
..((((((.(--((.(((((.....)).((((((.....(((((..(.....)..))))).....))))))......)))...)))...))---.)))). ( -28.10)
>DroSim_CAF1 30707 97 + 1
GUCUGUGUGUGUGUGUGUGCUAAAGGCAUUUGCCGCAAAUCAGGUGAAAGUUUUGCCUGAGAAAAGGCAAAGACAAAACAAAAACAACAAC---AACAGC
..((((.(((.(((.(((((.....)).((((((.....(((((..(.....)..))))).....))))))......)))...)))...))---))))). ( -29.00)
>consensus
GUCUGUGUGU__GUGUGUGCUAAAGGCAUUUGCCGCAAAUCAGGUGAAAGUUUUGCCUGAGAAAAGGCAAAGACAAAACAAAAACAACAAC___AACAGC
((((............((((.....))))(((((.....(((((..(.....)..))))).....))))))))).......................... (-24.90 = -24.90 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:04 2006