Locus 4086

Sequence ID X_DroMel_CAF1
Location 10,782,218 – 10,782,320
Length 102
Max. P 0.623225
window6718

overview

Window 8

Location 10,782,218 – 10,782,320
Length 102
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 88.89
Mean single sequence MFE -25.80
Consensus MFE -25.80
Energy contribution -25.80
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -0.84
Structure conservation index 1.00
SVM decision value 0.18
SVM RNA-class probability 0.623225
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10782218 102 + 22224390
AAAAACAAGUUCCUCUAUUGACUCUGUUAAUUCGUGAGCACUUGCCGGGCCAGUUGGCAUCGCACAGAUUCGUUACUGGGCCAGGCCCAAACUU------------------CAACUCCA
.....(((((..(((.((((((...))))))....))).)))))..(((((...((((......(((........))).)))))))))......------------------........ ( -25.80)
>DroSec_CAF1 31675 120 + 1
AAAAACAAGUUCCUCUAUUGACUCUGUUAAUUCGUGAGCACUUGCCGGGCCAGUUGGCAUCGCACAGAUACGUUACUGGGCCAGGCCCAAACUUCAUUUCCAACUCCAACUCCAACUCCA
.....(((((..(((.((((((...))))))....))).)))))..(((((...((((......(((........))).)))))))))................................ ( -25.80)
>DroSim_CAF1 30415 120 + 1
AAAAACAAGUUCCUCUAUUGACUCUGUUAAUUCGUGAGCACUUGCCGGGCCAGUUGGCAUCGCACAGAUACGUUACUGGGCCAGGCCCAAGCUUCAUUUCCAACUCCAACUCCAACUCCA
.....(((((..(((.((((((...))))))....))).)))))..(((((...((((......(((........))).)))))))))................................ ( -25.80)
>consensus
AAAAACAAGUUCCUCUAUUGACUCUGUUAAUUCGUGAGCACUUGCCGGGCCAGUUGGCAUCGCACAGAUACGUUACUGGGCCAGGCCCAAACUUCAUUUCCAACUCCAACUCCAACUCCA
.....(((((..(((.((((((...))))))....))).)))))..(((((...((((......(((........))).)))))))))................................ (-25.80 = -25.80 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:02 2006