Locus 4085

Sequence ID X_DroMel_CAF1
Location 10,781,838 – 10,781,933
Length 95
Max. P 0.981134
window6716 window6717

overview

Window 6

Location 10,781,838 – 10,781,933
Length 95
Sequences 3
Columns 95
Reading direction forward
Mean pairwise identity 100.00
Mean single sequence MFE -32.20
Consensus MFE -32.20
Energy contribution -32.20
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.40
Structure conservation index 1.00
SVM decision value 1.56
SVM RNA-class probability 0.963815
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10781838 95 + 22224390
GACUGCAGGCAGCGACGUCUUAGCAUUGGAAUGCGGUCGAACCCGUAGCUAGCCAAGAUUUUUGCUGGCUGCCUUAGUCAUUGUUUUUGUUAUUA
((((((((.((((((.(((((.((..(((..(((((......))))).))))).)))))..)))))).))))...))))................ ( -32.20)
>DroSec_CAF1 31300 95 + 1
GACUGCAGGCAGCGACGUCUUAGCAUUGGAAUGCGGUCGAACCCGUAGCUAGCCAAGAUUUUUGCUGGCUGCCUUAGUCAUUGUUUUUGUUAUUA
((((((((.((((((.(((((.((..(((..(((((......))))).))))).)))))..)))))).))))...))))................ ( -32.20)
>DroSim_CAF1 30040 95 + 1
GACUGCAGGCAGCGACGUCUUAGCAUUGGAAUGCGGUCGAACCCGUAGCUAGCCAAGAUUUUUGCUGGCUGCCUUAGUCAUUGUUUUUGUUAUUA
((((((((.((((((.(((((.((..(((..(((((......))))).))))).)))))..)))))).))))...))))................ ( -32.20)
>consensus
GACUGCAGGCAGCGACGUCUUAGCAUUGGAAUGCGGUCGAACCCGUAGCUAGCCAAGAUUUUUGCUGGCUGCCUUAGUCAUUGUUUUUGUUAUUA
((((((((.((((((.(((((.((..(((..(((((......))))).))))).)))))..)))))).))))...))))................ (-32.20 = -32.20 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 7

Location 10,781,838 – 10,781,933
Length 95
Sequences 3
Columns 95
Reading direction reverse
Mean pairwise identity 100.00
Mean single sequence MFE -27.80
Consensus MFE -27.80
Energy contribution -27.80
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.72
Structure conservation index 1.00
SVM decision value 1.88
SVM RNA-class probability 0.981134
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10781838 95 - 22224390
UAAUAACAAAAACAAUGACUAAGGCAGCCAGCAAAAAUCUUGGCUAGCUACGGGUUCGACCGCAUUCCAAUGCUAAGACGUCGCUGCCUGCAGUC
................((((.((((((((((........))))))(((.(((((.....))((((....)))).....))).)))))))..)))) ( -27.80)
>DroSec_CAF1 31300 95 - 1
UAAUAACAAAAACAAUGACUAAGGCAGCCAGCAAAAAUCUUGGCUAGCUACGGGUUCGACCGCAUUCCAAUGCUAAGACGUCGCUGCCUGCAGUC
................((((.((((((((((........))))))(((.(((((.....))((((....)))).....))).)))))))..)))) ( -27.80)
>DroSim_CAF1 30040 95 - 1
UAAUAACAAAAACAAUGACUAAGGCAGCCAGCAAAAAUCUUGGCUAGCUACGGGUUCGACCGCAUUCCAAUGCUAAGACGUCGCUGCCUGCAGUC
................((((.((((((((((........))))))(((.(((((.....))((((....)))).....))).)))))))..)))) ( -27.80)
>consensus
UAAUAACAAAAACAAUGACUAAGGCAGCCAGCAAAAAUCUUGGCUAGCUACGGGUUCGACCGCAUUCCAAUGCUAAGACGUCGCUGCCUGCAGUC
................((((.((((((((((........))))))(((.(((((.....))((((....)))).....))).)))))))..)))) (-27.80 = -27.80 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:01 2006