Locus 4084

Sequence ID X_DroMel_CAF1
Location 10,781,537 – 10,781,649
Length 112
Max. P 0.810470
window6715

overview

Window 5

Location 10,781,537 – 10,781,649
Length 112
Sequences 3
Columns 112
Reading direction reverse
Mean pairwise identity 95.77
Mean single sequence MFE -34.20
Consensus MFE -32.39
Energy contribution -32.17
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -1.92
Structure conservation index 0.95
SVM decision value 0.65
SVM RNA-class probability 0.810470
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10781537 112 - 22224390
ACUAAGUGUUGGAUAAGUGAAGCCAGGUUUUUUUGCGGCAUGGGUUGGGCACUUCAGGUUGGUAACGGAAGUUGCGCAAUUGAAGGCACUUGAAUUGAGAUUCAUCUCUCAA
..(((((((.......((..((((..(((.......)))...))))..)).((((((.((((((((....))))).))))))))))))))))..((((((......)))))) ( -34.20)
>DroSec_CAF1 31010 107 - 1
ACUAAGUGUUGGAUAAGUGAAGCCAGGUUU--UUGCGGCAUGGGUUGGGCACUUCAGGUUGGCAACGGAAGUUGCGCAAUGGAAGGCACUUGAAUUGAGAUUCAUCUCU---
..(((((((.......((..((((..(((.--....)))...))))..)).((((..(((((((((....))))).)))).)))))))))))....((((....)))).--- ( -34.20)
>DroSim_CAF1 29756 107 - 1
ACUAAGUGUUGGAUAAGUGAAGCCAGGUUU--UUGCGGCAUGGGUUGGGCACUUCAGGUUGGCAACGGAAGUUGCGCAAUGGAAGGCACUUGAAUUGAGAUUCAUCUCU---
..(((((((.......((..((((..(((.--....)))...))))..)).((((..(((((((((....))))).)))).)))))))))))....((((....)))).--- ( -34.20)
>consensus
ACUAAGUGUUGGAUAAGUGAAGCCAGGUUU__UUGCGGCAUGGGUUGGGCACUUCAGGUUGGCAACGGAAGUUGCGCAAUGGAAGGCACUUGAAUUGAGAUUCAUCUCU___
..(((((((.......((..((((..(((.......)))...))))..)).((((..(((((((((....))))).)))).)))))))))))....((((....)))).... (-32.39 = -32.17 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:59 2006