Locus 4082

Sequence ID X_DroMel_CAF1
Location 10,780,254 – 10,780,374
Length 120
Max. P 0.963018
window6711

overview

Window 1

Location 10,780,254 – 10,780,374
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 96.67
Mean single sequence MFE -36.93
Consensus MFE -33.87
Energy contribution -33.77
Covariance contribution -0.11
Combinations/Pair 1.05
Mean z-score -2.96
Structure conservation index 0.92
SVM decision value 1.55
SVM RNA-class probability 0.963018
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10780254 120 - 22224390
AAUUUGUACCUACAAACUGGAGCUGAUGAACGAUAUGGUCUUAAAAGGCCAUAUCCAAUUUAAUGGCCGGCAAGCUUUCGGUUUCUGGUAUCACACAGUUUCCCAAAGUGGAUCUGGCAU
.(((.((.((........)).)).)))....((((((((((....))))))))))..........(((((...(((((.((...(((........)))...)).)))))....))))).. ( -34.70)
>DroSec_CAF1 29790 120 - 1
AAUUUAUACCUACAAGCUGGAGCUGAUGAACGAUAUGGUCUCAAAAGGCCAUAUCCAAUUUAAUGGACGGCAAGCUUUCGGUUUCUGGUAUCACACAGAUUCCCAAAGUGGAUCUGGCAU
...............((..((((((........((((((((....))))))))((((......))))))))..(((((.((..((((........))))..)).)))))...))..)).. ( -38.10)
>DroSim_CAF1 28462 120 - 1
AAUUUAUACCUACAAGCUGGAGCUAAUGAACGAUAUGGUCUCAAAAGGCCAUAUCCAAUUUAAUGGCCGGCAAGCUUUCGGUUUCUGGUAUCACACAGAUUCCCAAAGUGGAUCUGGCAU
...............((..((((((.((((.((((((((((....))))))))))...)))).))))......(((((.((..((((........))))..)).)))))...))..)).. ( -38.00)
>consensus
AAUUUAUACCUACAAGCUGGAGCUGAUGAACGAUAUGGUCUCAAAAGGCCAUAUCCAAUUUAAUGGCCGGCAAGCUUUCGGUUUCUGGUAUCACACAGAUUCCCAAAGUGGAUCUGGCAU
.....(((((...(((((((((((..((...((((((((((....))))))))))((......))..))...))).))))))))..)))))....(((((((.......))))))).... (-33.87 = -33.77 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:56 2006