Locus 4080

Sequence ID X_DroMel_CAF1
Location 10,779,968 – 10,780,059
Length 91
Max. P 0.751828
window6709

overview

Window 9

Location 10,779,968 – 10,780,059
Length 91
Sequences 4
Columns 109
Reading direction reverse
Mean pairwise identity 82.00
Mean single sequence MFE -26.70
Consensus MFE -19.12
Energy contribution -20.00
Covariance contribution 0.88
Combinations/Pair 1.07
Mean z-score -1.78
Structure conservation index 0.72
SVM decision value 0.48
SVM RNA-class probability 0.751828
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10779968 91 - 22224390
CAACAACGU-CUGGCUGCGACUGGCUGACUGACAGUUUGACUUAUUGGCUAAAAGCUUUGGCCAAAAACAGUCAACAA-CAGCACGCACUCAC----------------
.........-.((..((((.(((((((.....))))((((((..((((((((.....))))))))....))))))...-)))..))))..)).---------------- ( -25.40)
>DroSec_CAF1 29494 91 - 1
CAACAACGU-CUGGCUGCGACUGGCUGACUGACAGUUUGACUUAUUGGCUAAAAGCUUUGGCCAAAAACAGUCAACAA-CAGCACGCACUCAC----------------
.........-.((..((((.(((((((.....))))((((((..((((((((.....))))))))....))))))...-)))..))))..)).---------------- ( -25.40)
>DroSim_CAF1 28166 91 - 1
CAACAACGU-CUGGCUGCGACUGGCUGACUGACAGUUUGACUUAUUGGCUAAAAGCUUUGGCCAAAAACAGUCAACAA-CAGCACGCACUCAC----------------
.........-.((..((((.(((((((.....))))((((((..((((((((.....))))))))....))))))...-)))..))))..)).---------------- ( -25.40)
>DroPer_CAF1 41007 107 - 1
CCACAAUUUACUG--UGUGCCUGUCUGACGGACAGUUUGACUCAUUGGCUAAAAGCUUUGGCCAAAAGCAGACAACAGUCAACUGGCAAUCGCUUGGCCCGGUGUGCCC
.((((......))--))((((.((.((((.....(((((.((..((((((((.....)))))))).)))))))....)))))).)))).......(((.......))). ( -30.60)
>consensus
CAACAACGU_CUGGCUGCGACUGGCUGACUGACAGUUUGACUUAUUGGCUAAAAGCUUUGGCCAAAAACAGUCAACAA_CAGCACGCACUCAC________________
...........(((.((((.(((((((.....))))((((((..((((((((.....))))))))....))))))....)))..)))).)))................. (-19.12 = -20.00 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:54 2006