| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,778,340 – 10,778,444 |
| Length | 104 |
| Max. P | 0.898880 |
| Location | 10,778,340 – 10,778,444 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 97.44 |
| Mean single sequence MFE | -27.10 |
| Consensus MFE | -25.62 |
| Energy contribution | -25.73 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.95 |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.898880 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10778340 104 - 22224390 UUUAAAUAAAGUAAAAGUCAAUUAACAUCUUUGUCGCAUUAGCAUGAAUGUGAGUGAUUGUGUGAGCUGGCAUCCGUGCUUGUGUUUGCUUUGGCUUUUGUUAU ...........((((((((((...(((....))).((((.((((((.((((.(((..........))).)))).)))))).)))).....)))))))))).... ( -27.00) >DroSec_CAF1 27858 104 - 1 UUUAAAUAAAGUAAAAGUCAAUUAACAUCUUUGUCGCAUUAGCAUGAAUGUGAGUGAUUGUGUGAGCUGACAUCGGUGGUGGUGUUUGCUUUGGCUUUUGUUAU ...........(((((((((....((((..((((((((((......))))))).)))..))))((((.(((((((....))))))).))))))))))))).... ( -27.20) >DroSim_CAF1 26521 104 - 1 UUUAAAUAAAGUAAAAGUCAAUUAACAUCUUUGUCGCAUUAGCAUGAAUGUGAGUGAUUGUGUGAGCUGGCAUCGGUGGUGGUGUUUGCUUUGGCUUUUGUUAU ...........(((((((((....((((..((((((((((......))))))).)))..))))((((..((((((....))))))..))))))))))))).... ( -27.10) >consensus UUUAAAUAAAGUAAAAGUCAAUUAACAUCUUUGUCGCAUUAGCAUGAAUGUGAGUGAUUGUGUGAGCUGGCAUCGGUGGUGGUGUUUGCUUUGGCUUUUGUUAU ...........(((((((((....((((..((((((((((......))))))).)))..))))((((..(((((......)))))..))))))))))))).... (-25.62 = -25.73 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:49 2006