Locus 4074

Sequence ID X_DroMel_CAF1
Location 10,777,120 – 10,777,220
Length 100
Max. P 0.500000
window6701

overview

Window 1

Location 10,777,120 – 10,777,220
Length 100
Sequences 4
Columns 100
Reading direction reverse
Mean pairwise identity 88.94
Mean single sequence MFE -21.65
Consensus MFE -15.26
Energy contribution -15.32
Covariance contribution 0.06
Combinations/Pair 1.09
Mean z-score -1.50
Structure conservation index 0.70
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10777120 100 - 22224390
UCCGAACGCGAAUCCAAAAAGUUUCAUAGUUGCACACGUGCAAUUGGCUAGAAAUCGAAUGUAUCUUCGAUGAGCUCACCGCAAUACCGAACCUUUAUUA
.......(((................((((((((....))))))))(((....((((((......)))))).)))....))).................. ( -20.90)
>DroSec_CAF1 26667 99 - 1
UCCAAAUACGAAUUCAUGAAGU-UCAUAGUUGCACACGUGCAAUUGGCUAGAAAUCGAAUGAAUCUUCGAUGAGCUCAUCGCAAUACCGAACCUUUAUUA
...............(((((((-((.((((((((....))))))))(((....((((((......)))))).))).............))).)))))).. ( -21.70)
>DroSim_CAF1 25320 99 - 1
UCCAAAUACGAAUCCAUGAAGU-UCAUAGUUGCACACGUGCAAUUGGCUAGAAAUCAAAUGCAUCUUCGAUGAGCUCAUCGCAAUACCGAACCUUUAUUA
...............(((((((-((...(((((....(((((.((((.......)))).)))))....((((....)))))))))...))).)))))).. ( -20.50)
>DroYak_CAF1 26293 96 - 1
---GUAUUCGAAUUCAAAAAGU-UCAUGGUUGCACACGUGCAAUUGGCUUGAAAUCGAAUGCAUCUUCGAUGAGCUCACCGCAAUGCCGAAACUCUAUUA
---((((((((.((((...(((-(...(((((((....))))))))))))))).))))))))...((((....((.....)).....))))......... ( -23.50)
>consensus
UCCAAAUACGAAUCCAAAAAGU_UCAUAGUUGCACACGUGCAAUUGGCUAGAAAUCGAAUGCAUCUUCGAUGAGCUCACCGCAAUACCGAACCUUUAUUA
.................((((..((.((((((((....))))))))(((....((((((......)))))).))).............))..)))).... (-15.26 = -15.32 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:47 2006