Locus 407

Sequence ID X_DroMel_CAF1
Location 1,186,668 – 1,186,788
Length 120
Max. P 0.783392
window626

overview

Window 6

Location 1,186,668 – 1,186,788
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 91.39
Mean single sequence MFE -44.88
Consensus MFE -35.81
Energy contribution -36.06
Covariance contribution 0.25
Combinations/Pair 1.09
Mean z-score -1.90
Structure conservation index 0.80
SVM decision value 0.56
SVM RNA-class probability 0.783392
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1186668 120 + 22224390
UCGAACCACCACCUGGUCAUCGCCGUCACCCACUUCGAGGAACGAGUUCCAGUCGGCCAGGAAGUAAAAUCCAUUCUUCUUCUUGGGCGGCGGUGGCUCCUCGCUGACAGGAUCAGGUCC
..........((((((((.((((.((((((........((((....)))).((((.((((((((..............)))))))).)))))))))).....)).))...)))))))).. ( -44.04)
>DroSec_CAF1 22548 120 + 1
UCGAACCACCACCUGGUCAUCGCCGUCACCCACUUCCAGGAACGAGUUCCAGUCGGCCAGGAAGUAAAAUCCAUUCUUCUUUUUGGCCGGCGGUGGUUCCUCGCUGACAGGAUCAGGUCC
..........((((((((.(((.((....(((((....((((....)))).(((((((((((((..............)))))))))))))))))).....)).)))...)))))))).. ( -45.34)
>DroEre_CAF1 21889 120 + 1
UCGAACCACCACCUGGUCAUCGCCGUCACCCACUUCGAGGAACGAAUUCCAGUCGGCCAGGAAGUAAAAUCCAUUCUUCUUCUUUGGCGGCGGUGGCUCCUCGCUGACCGGAUCAGGUCC
..........((((((((..(((((((........(((((((....))))..)))(((((((((..............)))).))))))))))))((.....))......)))))))).. ( -38.24)
>DroAna_CAF1 7156 120 + 1
CCGGACCACCACCUGGUCGUCGCCGUCGCCCACCUCCAGGAAGGAGUUCCAAUCGGCCAGGAAGUAGAAGCCGUUCUUCUUCUUUGGCGGCGGCGGCUCUUCGCUGACAGGAUCCGGUCC
..(((((....((((..((..(((((((((...((((.....)))).........(((((((((.((((....)))).)))).))))))))))))))....))....))))....))))) ( -51.90)
>consensus
UCGAACCACCACCUGGUCAUCGCCGUCACCCACUUCCAGGAACGAGUUCCAGUCGGCCAGGAAGUAAAAUCCAUUCUUCUUCUUGGGCGGCGGUGGCUCCUCGCUGACAGGAUCAGGUCC
..........((((((((.((((.((((((........((((....)))).((((.((((((((..............)))))))).)))))))))).....)).))...)))))))).. (-35.81 = -36.06 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:51 2006