Locus 4064

Sequence ID X_DroMel_CAF1
Location 10,759,352 – 10,759,452
Length 100
Max. P 0.966750
window6678

overview

Window 8

Location 10,759,352 – 10,759,452
Length 100
Sequences 3
Columns 107
Reading direction forward
Mean pairwise identity 75.63
Mean single sequence MFE -27.30
Consensus MFE -15.78
Energy contribution -15.90
Covariance contribution 0.12
Combinations/Pair 1.18
Mean z-score -2.31
Structure conservation index 0.58
SVM decision value 1.60
SVM RNA-class probability 0.966750
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10759352 100 + 22224390
GGCAGAAAAUAGGGGGGAAAUAGGGGAGAGUUUUGUUUAUUUUAUAUUCGUAUUCUGGUUUUU-------UUUUGCCGGGCAAGGCAUUUGCCGGGGUUUUCCUCUU
..........(((((((((((.((.(((.(((((((......(((....)))..(((((....-------....)))))))))))).))).))...))))))))))) ( -27.30)
>DroSim_CAF1 6407 103 + 1
GGUGGAAAAUAGGG-GGAAAUAGGGGAGAGUUUUGUUUAUUUUAUAUUCGUUUUCUUGUUUUUUUAUUUUUUUUGCCGGGCAGGGCAUUUGCCGGGGUUUACCU---
((..(((((...((-(((((((((..((.....(((.......)))....))..)))))))))))...)))))..)).(((((.....)))))(((.....)))--- ( -27.40)
>DroEre_CAF1 7823 90 + 1
GGGAGAAAAUAGG---GAAACAGGGGAGAGUUUUGUUUAUUUUAU--------UCUUCUUU------UUUUUUUGCGGGGUAGACCAUUUUCCGGGGGUUUCCCCCU
.((((((..((((---((((.((((((((((............))--------))))))))------)))))))).((......)).))))))(((((...))))). ( -27.20)
>consensus
GGCAGAAAAUAGGG_GGAAAUAGGGGAGAGUUUUGUUUAUUUUAUAUUCGU_UUCUUGUUUUU____UUUUUUUGCCGGGCAGGGCAUUUGCCGGGGUUUUCCUC_U
((((((..((((((...((((((((.....)))))))).))))))............................((((......))))))))))((((....)))).. (-15.78 = -15.90 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:27 2006